Class: acid anion grouping class (AcidAnionGroupingClass)
A molecule grouping class that groups the different ion forms of the base of an acid
URI: chemrof:AcidAnionGroupingClass
classDiagram
class AcidAnionGroupingClass
click AcidAnionGroupingClass href "../AcidAnionGroupingClass"
GroupingClassForAcidsOrBases <|-- AcidAnionGroupingClass
click GroupingClassForAcidsOrBases href "../GroupingClassForAcidsOrBases"
AcidAnionGroupingClass : conjugate_acid_of
AcidAnionGroupingClass --> "0..1" ChemicalEntity : conjugate_acid_of
click ChemicalEntity href "../ChemicalEntity"
AcidAnionGroupingClass : conjugate_base_of
AcidAnionGroupingClass --> "0..1" ChemicalEntity : conjugate_base_of
click ChemicalEntity href "../ChemicalEntity"
AcidAnionGroupingClass : id
AcidAnionGroupingClass : name
AcidAnionGroupingClass : owl_subclass_of
AcidAnionGroupingClass --> "0..1" OwlClass : owl_subclass_of
click OwlClass href "../OwlClass"
AcidAnionGroupingClass : subtype_of
AcidAnionGroupingClass --> "*" MoleculeGroupingClass : subtype_of
click MoleculeGroupingClass href "../MoleculeGroupingClass"
Inheritance
- GroupingClass [ OwlClass]
- PhysicochemicalEntityGroupingClass
- ChemicalGroupingClass [ OwlClass]
- MoleculeGroupingClass
- GroupingClassForAcidsOrBases
- AcidAnionGroupingClass
- GroupingClassForAcidsOrBases
- MoleculeGroupingClass
- ChemicalGroupingClass [ OwlClass]
- PhysicochemicalEntityGroupingClass
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
conjugate_base_of | 0..1 ChemicalEntity |
connects the base form of an acid to an acid | GroupingClassForAcidsOrBases |
conjugate_acid_of | 0..1 ChemicalEntity |
GroupingClassForAcidsOrBases | |
id | 1 String |
ChemicalGroupingClass, GroupingClass | |
owl_subclass_of | 0..1 OwlClass |
Holds between C and P if C owl:subClassOf P | OwlClass |
name | 0..1 String |
name of chemical entity | GroupingClass |
subtype_of | * MoleculeGroupingClass |
grouping classes can be arranged in hierarchies arbitrarily deep | GroupingClass |
Examples
Value |
---|
citrate |
pimelate |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/chemrof
Mappings
Mapping Type | Mapped Value |
---|---|
self | chemrof:AcidAnionGroupingClass |
native | chemrof:AcidAnionGroupingClass |
LinkML Source
Direct
name: AcidAnionGroupingClass
description: A molecule grouping class that groups the different ion forms of the
base of an acid
title: acid anion grouping class
examples:
- value: citrate
- value: pimelate
from_schema: https://w3id.org/chemrof
is_a: GroupingClassForAcidsOrBases
slot_usage:
name:
name: name
domain_of:
- DomainEntity
- GroupingClass
- Atom
- AtomOccurrence
pattern: ate$
defining_slots:
- conjugate_base_of
Induced
name: AcidAnionGroupingClass
description: A molecule grouping class that groups the different ion forms of the
base of an acid
title: acid anion grouping class
examples:
- value: citrate
- value: pimelate
from_schema: https://w3id.org/chemrof
is_a: GroupingClassForAcidsOrBases
slot_usage:
name:
name: name
domain_of:
- DomainEntity
- GroupingClass
- Atom
- AtomOccurrence
pattern: ate$
attributes:
conjugate_base_of:
name: conjugate_base_of
description: 'connects the base form of an acid to an acid. Also connects the
different charge states of the base. Example: the different charge states of
lactate (CHEBI:24996) conjugate base of lactic acid (CHEBI:28358)'
title: conjugate base of
notes:
- sometimes chebi hops over a state skipping an intermediate
from_schema: https://w3id.org/chemrof
see_also:
- https://academic.oup.com/nar/article/36/suppl_1/D344/2506390
aliases:
- is conjugate base of (chebi)
rank: 1000
is_a: direct_conjugatated_form_of
mixins:
- has_lower_charge_from
domain: ChemicalEntity
alias: conjugate_base_of
owner: AcidAnionGroupingClass
domain_of:
- GroupingClassForAcidsOrBases
- PolyatomicIon
range: ChemicalEntity
conjugate_acid_of:
name: conjugate_acid_of
title: conjugate acid of
todos:
- decide on domain/range. in chebi, daidzein monosulfate is conjugate acid of
daidzein monosulfate(1-), yet it is an acid derivative, not an acid
from_schema: https://w3id.org/chemrof
see_also:
- https://academic.oup.com/nar/article/36/suppl_1/D344/2506390
aliases:
- is conjugate acid of (chebi)
rank: 1000
is_a: direct_conjugatated_form_of
mixins:
- has_higher_charge_from
domain: ChemicalEntity
alias: conjugate_acid_of
owner: AcidAnionGroupingClass
domain_of:
- GroupingClassForAcidsOrBases
- PolyatomicIon
inverse: conjugate_base_of
range: ChemicalEntity
id:
name: id
title: id
from_schema: https://w3id.org/chemrof
mappings:
- schema:identifier
rank: 1000
is_a: information_property
identifier: true
alias: id
owner: AcidAnionGroupingClass
domain_of:
- DomainEntity
- GroupingClass
- ChemicalGroupingClass
range: string
required: true
owl_subclass_of:
name: owl_subclass_of
description: 'Holds between C and P if C owl:subClassOf P. Note that in this model,
most classes are metaclasses (see ''owl class''), where these metaclasses may
represent *groupings* or specific countable elements or species. We provide
two different sub-properties of subclass of for two cases: (1) subtype_of, which
connects grouping classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a
amino-acid), (2) classified_by, which connects a specific element to a grouping
class (e.g. methane is_a hydrocarbon; iron is_a metal; serine is_a amino-acid)'
title: owl subclass of
from_schema: https://w3id.org/chemrof
aliases:
- is a
exact_mappings:
- rdfs:subClassOf
narrow_mappings:
- bo:family
rank: 1000
is_a: classification_relationship
mixin: true
domain: OwlClass
alias: owl_subclass_of
owner: AcidAnionGroupingClass
domain_of:
- OwlClass
range: OwlClass
name:
name: name
description: name of chemical entity. E.g. nickel, carbon-16
title: name
from_schema: https://w3id.org/chemrof
rank: 1000
is_a: information_property
slot_uri: rdfs:label
alias: name
owner: AcidAnionGroupingClass
domain_of:
- DomainEntity
- GroupingClass
- Atom
- AtomOccurrence
range: string
pattern: ate$
subtype_of:
name: subtype_of
description: grouping classes can be arranged in hierarchies arbitrarily deep.
Note that subtype_of should only connect two grouping classes
title: subtype of
from_schema: https://w3id.org/chemrof
rank: 1000
is_a: chemical_to_chemical_relationship
domain: OwlClass
alias: subtype_of
owner: AcidAnionGroupingClass
domain_of:
- GroupingClass
range: MoleculeGroupingClass
required: false
multivalued: true
defining_slots:
- conjugate_base_of