Class: chemical grouping class (ChemicalGroupingClass)
Instances of this class represent generic chemical concepts that can be used to group more specific concepts, or to classify entities. For example "amino acid" is a grouping for "serine", "leucine" etc; ester is a grouping for nitroglycerin; alkane is a grouping for pentane, butane, methane, etc
- NOTE: this is an abstract class and should not be instantiated directly
URI: chemrof:ChemicalGroupingClass
classDiagram
class ChemicalGroupingClass
click ChemicalGroupingClass href "../ChemicalGroupingClass"
OwlClass <|-- ChemicalGroupingClass
click OwlClass href "../OwlClass"
PhysicochemicalEntityGroupingClass <|-- ChemicalGroupingClass
click PhysicochemicalEntityGroupingClass href "../PhysicochemicalEntityGroupingClass"
ChemicalGroupingClass <|-- ChemicalGroupingByCharge
click ChemicalGroupingByCharge href "../ChemicalGroupingByCharge"
ChemicalGroupingClass <|-- MoleculeGroupingClass
click MoleculeGroupingClass href "../MoleculeGroupingClass"
ChemicalGroupingClass <|-- MolecularComponentGroupingClass
click MolecularComponentGroupingClass href "../MolecularComponentGroupingClass"
ChemicalGroupingClass <|-- AtomGroupingClass
click AtomGroupingClass href "../AtomGroupingClass"
ChemicalGroupingClass : id
ChemicalGroupingClass : name
ChemicalGroupingClass : owl_subclass_of
ChemicalGroupingClass --> "0..1" OwlClass : owl_subclass_of
click OwlClass href "../OwlClass"
ChemicalGroupingClass : subtype_of
ChemicalGroupingClass --> "*" ChemicalGroupingClass : subtype_of
click ChemicalGroupingClass href "../ChemicalGroupingClass"
Inheritance
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
id | 1 String |
direct | |
owl_subclass_of | 0..1 OwlClass |
Holds between C and P if C owl:subClassOf P | OwlClass |
name | 0..1 String |
name of chemical entity | GroupingClass |
subtype_of | * ChemicalGroupingClass |
A subtype_of relationship holds between C and P if C is a more specialized fo... | GroupingClass |
Usages
used by | used in | type | used |
---|---|---|---|
ChemicalGroupingClass | subtype_of | range | ChemicalGroupingClass |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/chemrof
Mappings
Mapping Type | Mapped Value |
---|---|
self | chemrof:ChemicalGroupingClass |
native | chemrof:ChemicalGroupingClass |
LinkML Source
Direct
name: ChemicalGroupingClass
description: Instances of this class represent generic chemical concepts that can
be used to group more specific concepts, or to classify entities. For example "amino
acid" is a grouping for "serine", "leucine" etc; ester is a grouping for nitroglycerin;
alkane is a grouping for pentane, butane, methane, etc
title: chemical grouping class
from_schema: https://w3id.org/chemrof
is_a: PhysicochemicalEntityGroupingClass
abstract: true
mixins:
- OwlClass
slots:
- id
slot_usage:
subtype_of:
name: subtype_of
domain_of:
- GroupingClass
range: ChemicalGroupingClass
classifies:
name: classifies
range: ChemicalEntity
Induced
name: ChemicalGroupingClass
description: Instances of this class represent generic chemical concepts that can
be used to group more specific concepts, or to classify entities. For example "amino
acid" is a grouping for "serine", "leucine" etc; ester is a grouping for nitroglycerin;
alkane is a grouping for pentane, butane, methane, etc
title: chemical grouping class
from_schema: https://w3id.org/chemrof
is_a: PhysicochemicalEntityGroupingClass
abstract: true
mixins:
- OwlClass
slot_usage:
subtype_of:
name: subtype_of
domain_of:
- GroupingClass
range: ChemicalGroupingClass
classifies:
name: classifies
range: ChemicalEntity
attributes:
id:
name: id
title: id
from_schema: https://w3id.org/chemrof
mappings:
- schema:identifier
rank: 1000
is_a: information_property
identifier: true
alias: id
owner: ChemicalGroupingClass
domain_of:
- DomainEntity
- GroupingClass
- ChemicalGroupingClass
range: string
required: true
owl_subclass_of:
name: owl_subclass_of
description: 'Holds between C and P if C owl:subClassOf P. Note that in this model,
most classes are metaclasses (see ''owl class''), where these metaclasses may
represent *groupings* or specific countable elements or species. We provide
two different sub-properties of subclass of for two cases: (1) subtype_of, which
connects grouping classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a
amino-acid), (2) classified_by, which connects a specific element to a grouping
class (e.g. methane is_a hydrocarbon; iron is_a metal; serine is_a amino-acid)'
title: owl subclass of
from_schema: https://w3id.org/chemrof
aliases:
- is a
exact_mappings:
- rdfs:subClassOf
narrow_mappings:
- bo:family
rank: 1000
is_a: classification_relationship
mixin: true
domain: OwlClass
alias: owl_subclass_of
owner: ChemicalGroupingClass
domain_of:
- OwlClass
range: OwlClass
name:
name: name
description: name of chemical entity. E.g. nickel, carbon-16
title: name
from_schema: https://w3id.org/chemrof
close_mappings:
- bo:symbol
rank: 1000
is_a: information_property
slot_uri: rdfs:label
alias: name
owner: ChemicalGroupingClass
domain_of:
- DomainEntity
- GroupingClass
- Atom
- AtomOccurrence
range: string
subtype_of:
name: subtype_of
description: A subtype_of relationship holds between C and P if C is a more specialized
form of P. Here C and P denotes instances of OWL classes, where C and P both
function as grouping class
title: subtype of
from_schema: https://w3id.org/chemrof
rank: 1000
is_a: chemical_to_chemical_relationship
domain: OwlClass
alias: subtype_of
owner: ChemicalGroupingClass
domain_of:
- GroupingClass
range: ChemicalGroupingClass
required: false
multivalued: true