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Class: entity with connectivity specificied (EntityWithConnectivitySpecificied)

A mixin for an entity that consists of two or more atom occurrences where the connectivity is specified (corresponding to the /c layer in InChI)

URI: chemrof:EntityWithConnectivitySpecificied

 classDiagram
    class EntityWithConnectivitySpecificied
    click EntityWithConnectivitySpecificied href "../EntityWithConnectivitySpecificied"
      SpecificityMixin <|-- EntityWithConnectivitySpecificied
        click SpecificityMixin href "../SpecificityMixin"

      EntityWithConnectivitySpecificied : inchi_atom_connections_sublayer

      EntityWithConnectivitySpecificied : inchi_hydrogen_connections_sublayer

Inheritance

Slots

Name Cardinality and Range Description Inheritance
inchi_atom_connections_sublayer 0..1
String		 The atoms in the chemical formula (except for hydrogens) are numbered in sequ... direct
inchi_hydrogen_connections_sublayer 0..1
String		 Describes how many hydrogen atoms are connected to each of the other atoms direct

Mixin Usage

mixed into description

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/chemrof

Mappings

Mapping Type Mapped Value
self chemrof:EntityWithConnectivitySpecificied
native chemrof:EntityWithConnectivitySpecificied

LinkML Source

Direct

name: EntityWithConnectivitySpecificied
description: A mixin for an entity that consists of two or more atom occurrences where
  the connectivity is specified (corresponding to the /c layer in InChI)
title: entity with connectivity specificied
from_schema: https://w3id.org/chemrof
is_a: SpecificityMixin
mixin: true
slots:
- inchi_atom_connections_sublayer
- inchi_hydrogen_connections_sublayer

Induced

name: EntityWithConnectivitySpecificied
description: A mixin for an entity that consists of two or more atom occurrences where
  the connectivity is specified (corresponding to the /c layer in InChI)
title: entity with connectivity specificied
from_schema: https://w3id.org/chemrof
is_a: SpecificityMixin
mixin: true
attributes:
  inchi_atom_connections_sublayer:
    name: inchi_atom_connections_sublayer
    description: The atoms in the chemical formula (except for hydrogens) are numbered
      in sequence; this sublayer describes which atoms are connected by bonds to which
      other ones.
    title: inchi atom connections sublayer
    from_schema: https://w3id.org/chemrof
    rank: 1000
    is_a: inchi_sublayer_in_main_layer
    alias: inchi_atom_connections_sublayer
    owner: EntityWithConnectivitySpecificied
    domain_of:
    - PolyatomicEntity
    - StandardInchiObject
    - EntityWithConnectivitySpecificied
    range: string
    pattern: ^c.*
  inchi_hydrogen_connections_sublayer:
    name: inchi_hydrogen_connections_sublayer
    description: Describes how many hydrogen atoms are connected to each of the other
      atoms.
    title: inchi hydrogen connections sublayer
    from_schema: https://w3id.org/chemrof
    rank: 1000
    is_a: inchi_sublayer_in_main_layer
    alias: inchi_hydrogen_connections_sublayer
    owner: EntityWithConnectivitySpecificied
    domain_of:
    - StandardInchiObject
    - EntityWithConnectivitySpecificied
    range: string
    pattern: ^h.*