Slot: glycoct condensed (glycoct_condensed)

This is a multiline format used by GlycomeDB, among others, and uses a graph notation to represent glycans, similar to KCF. Monosaccharides are specified more strictly to be able to map the monosaccharides between different representations. Substituents, such as N-acetyl, are specified as separate nodes from their basetypes and are linked together in the edge section. If newlines are removed, this format can be made linear.

URI: chemrof:glycoct_condensed Alias: glycoct_condensed

Inheritance

• information_property
  • chemical_representation
    • carbohydrate_representation
      • glycoct_condensed

Applicable Classes

Name	Description	Modifies Slot
Glycan	A molecule consisting of monosaccharide residues joined to one another by gly...	no

Properties

• Range: ChemicalEncoding

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/chemrof

Mappings

Mapping Type	Mapped Value
self	chemrof:glycoct_condensed
native	chemrof:glycoct_condensed

LinkML Source

name: glycoct_condensed
description: This is a multiline format used by GlycomeDB, among others, and uses
  a graph notation to represent glycans, similar to KCF. Monosaccharides are specified
  more strictly to be able to map the monosaccharides between different representations.
  Substituents, such as N-acetyl, are specified as separate nodes from their basetypes
  and are linked together in the edge section. If newlines are removed, this format
  can be made linear.
title: glycoct condensed
from_schema: https://w3id.org/chemrof
rank: 1000
is_a: carbohydrate_representation
domain: ChemicalEntity
alias: glycoct_condensed
domain_of:
- Glycan
range: ChemicalEncoding