Slot: has atoms (has_atoms)
Relation between a molecule and the atoms it contains. Note that this is a shortcut relation: for granular representations go via atom occurrences
URI: chemrof:has_atoms
Inheritance
- chemical_to_chemical_relationship
- has_part
- has_atoms
- has_part
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Allotrope | A molecule consisting of atoms of the same element | no |
| Zwitterion | A molecule that has both a positive and negative charges but is net neutral | no |
| Peptide | no | |
| NonSpeciesMolecule | A molecule in which the units are not identical | no |
| Glycan | A macromolecule consisting of a large number of monosaccharides linked glycos... | no |
| NaturalProduct | no | |
| NetUnchargedMolecule | A molecule that has no net charge | no |
| Macromolecule | A large molecule, such as a polymer, lipid, or macrocycle | no |
| SmallMolecule | A molecule characterized by availability in small-molecule databases | no |
| Protein | no | |
| Molecule | A chemical entity that consists of two or more atoms where all atoms are conn... | no |
| Enantiomer | one of two stereoisomers of a chiral molecule that are mirror images | no |
| PolyatomicIon | A molecule that has a net charge | no |
| Copolymer | a polymer with a more than one type of repeating unit | no |
| MoleculeByChargeState | A molecule that has a charge state specified | no |
| Ester | An ester is a chemical compound derived from an acid (organic or inorganic) i... | no |
| Homopolymer | a polymer with a single type of repeating unit | no |
| NeutralMolecule | A molecule that has no net charge and is not a zwitterion | no |
| MolecularSpecies | A molecule in which the units are identical | no |
| MonomolecularPolymer | A macromolecule composed of repeating subunits | no |
| MolecularCation | A polyatomic ion that is positive | no |
| MolecularAnion | A polyatomic ion that is negative | no |
| Stereoisomer | no |
Properties
-
Range: Atom
-
Multivalued: True
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/chemrof
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | chemrof:has_atoms |
| native | chemrof:has_atoms |
LinkML Source
name: has_atoms
description: 'Relation between a molecule and the atoms it contains. Note that this
is a shortcut relation: for granular representations go via atom occurrences'
title: has atoms
from_schema: https://w3id.org/chemrof
rank: 1000
is_a: has_part
domain: Molecule
alias: has_atoms
domain_of:
- Molecule
range: Atom
multivalued: true