Slot: inchi atom connections sublayer (inchi_atom_connections_sublayer)
The atoms in the chemical formula (except for hydrogens) are numbered in sequence; this sublayer describes which atoms are connected by bonds to which other ones.
URI: chemrof:inchi_atom_connections_sublayer Alias: inchi_atom_connections_sublayer
Inheritance
- information_property
- inchi_component
- inchi_sublayer
- inchi_sublayer_in_main_layer
- inchi_atom_connections_sublayer
- inchi_sublayer_in_main_layer
- inchi_sublayer
- inchi_component
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| MolecularCation | A polyatomic ion that is positive | no |
| NonSpeciesMolecule | A molecule in which the units are not identical | no |
| Glycan | A macromolecule consisting of a large number of monosaccharides linked glycos... | no |
| ChemicalGroup | no | |
| RacemicMixture | a chemical compound that has equal amounts of left- and right-handed enantiom... | no |
| PolymerPart | no | |
| MolecularAnion | A polyatomic ion that is negative | no |
| PreciseChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| DNASequenceInterval | no | |
| MolecularComplex | A molecular complex is a chemical complex composed of at least one weakly int... | no |
| MolecularSpecies | A molecule in which the units are identical | no |
| ImpreciseChemicalMixture | A macroscopic polyatomic entity that consists of multiple chemical entities w... | no |
| Homopolymer | a polymer with a single type of repeating unit | no |
| NetUnchargedMolecule | A molecule that has no net charge | no |
| PolyatomicEntity | Any chemical entity consisting of more than one atom | yes |
| RNASequenceInterval | no | |
| PolyatomicIon | A molecule that has a net charge | no |
| Enantiomer | one of two stereoisomers of a chiral molecule that are mirror images | no |
| SequenceInterval | a chain of connected monomers in a linear polymer - for example, a sub-region... | no |
| StandardInchiObject | no | |
| MolecularSubsequence | no | |
| Peptide | no | |
| Zwitterion | A molecule that has both a positive and negative charges but is net neutral | no |
| Copolymer | a polymer with a more than one type of repeating unit | no |
| MonomolecularPolymer | A macromolecule composed of repeating subunits | no |
| NeutralMolecule | A molecule that has no net charge and is not a zwitterion | no |
| SmallMolecule | A molecule characterized by availability in small-molecule databases | no |
| Macromolecule | A large molecule, such as a polymer, lipid, or macrocycle | no |
| NucleotideSequenceInterval | no | |
| Monomer | no | |
| Molecule | A chemical entity that consists of two or more atoms where all atoms are conn... | no |
| ChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| Ester | An ester is a chemical compound derived from an acid (organic or inorganic) i... | no |
| ChemicalSalt | a chemical compound consisting of an ionic assembly of cations and anions | no |
| FunctionalGroup | no | |
| SupramolecularPolymer | polymeric arrays of monomeric units that are connected by reversible and high... | no |
| Stereoisomer | no | |
| AminoAcidSequenceInterval | no | |
| Protein | no | |
| Allotrope | A molecule consisting of atoms of the same element | no |
| MolecularComponent | A proper part of a molecule that is larger than an atom | no |
| NaturalProduct | no | |
| Moiety | a named part of a molecule | no |
| MoleculeByChargeState | A molecule that has a charge state specified | no |
| EntityWithConnectivitySpecificied | A mixin for an entity that consists of two or more atom occurrences where the... | no |
Properties
-
Range: String
-
Regex pattern:
^c.*
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/chemrof
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | chemrof:inchi_atom_connections_sublayer |
| native | chemrof:inchi_atom_connections_sublayer |
LinkML Source
name: inchi_atom_connections_sublayer
description: The atoms in the chemical formula (except for hydrogens) are numbered
in sequence; this sublayer describes which atoms are connected by bonds to which
other ones.
title: inchi atom connections sublayer
from_schema: https://w3id.org/chemrof
rank: 1000
is_a: inchi_sublayer_in_main_layer
alias: inchi_atom_connections_sublayer
domain_of:
- PolyatomicEntity
- StandardInchiObject
- EntityWithConnectivitySpecificied
range: string
pattern: ^c.*