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Slot: inchi atom connections sublayer (inchi_atom_connections_sublayer)

The atoms in the chemical formula (except for hydrogens) are numbered in sequence; this sublayer describes which atoms are connected by bonds to which other ones.

URI: chemrof:inchi_atom_connections_sublayer

Inheritance

Applicable Classes

Name Description Modifies Slot
Allotrope A molecule consisting of atoms of the same element no
PreciseChemicalMixture A polyatomic entity that consists of two or more parts that are weakly bound,... no
Zwitterion A molecule that has both a positive and negative charges but is net neutral no
Peptide no
ChemicalGroup no
NucleotideSequenceInterval no
NonSpeciesMolecule A molecule in which the units are not identical no
Glycan A macromolecule consisting of a large number of monosaccharides linked glycos... no
SupramolecularPolymer polymeric arrays of monomeric units that are connected by reversible and high... no
NaturalProduct no
NetUnchargedMolecule A molecule that has no net charge no
MolecularSubsequence no
Macromolecule A large molecule, such as a polymer, lipid, or macrocycle no
SmallMolecule A molecule characterized by availability in small-molecule databases no
RNASequenceInterval no
EntityWithConnectivitySpecificied A mixin for an entity that consists of two or more atom occurrences where the... no
ChemicalSalt a chemical compound consisting of an ionic assembly of cations and anions no
MolecularComplex A molecular complex is a chemical complex composed of at least one weakly int... no
MolecularComponent A proper part of a molecule that is larger than an atom no
Protein no
AminoAcidSequenceInterval no
PolymerPart no
Monomer no
Molecule A chemical entity that consists of two or more atoms where all atoms are conn... no
FunctionalGroup no
PolyatomicEntity Any chemical entity consisting of more than one atom yes
SequenceInterval a chain of connected monomers in a linear polymer - for example, a sub-region... no
Enantiomer one of two stereoisomers of a chiral molecule that are mirror images no
RacemicMixture a chemical compound that has equal amounts of left- and right-handed enantiom... no
Moiety a named part of a molecule no
PolyatomicIon A molecule that has a net charge no
ChemicalMixture A polyatomic entity that consists of two or more parts that are weakly bound,... no
Copolymer a polymer with a more than one type of repeating unit no
MoleculeByChargeState A molecule that has a charge state specified no
Ester An ester is a chemical compound derived from an acid (organic or inorganic) i... no
Homopolymer a polymer with a single type of repeating unit no
StandardInchiObject no
MolecularSpecies A molecule in which the units are identical no
MonomolecularPolymer A macromolecule composed of repeating subunits no
NeutralMolecule A molecule that has no net charge and is not a zwitterion no
DNASequenceInterval no
ImpreciseChemicalMixture A macroscopic polyatomic entity that consists of multiple chemical entities w... no
MolecularCation A polyatomic ion that is positive no
MolecularAnion A polyatomic ion that is negative no
Stereoisomer no

Properties

  • Range: String

  • Regex pattern: ^c.*

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/chemrof

Mappings

Mapping Type Mapped Value
self chemrof:inchi_atom_connections_sublayer
native chemrof:inchi_atom_connections_sublayer

LinkML Source

name: inchi_atom_connections_sublayer
description: The atoms in the chemical formula (except for hydrogens) are numbered
  in sequence; this sublayer describes which atoms are connected by bonds to which
  other ones.
title: inchi atom connections sublayer
from_schema: https://w3id.org/chemrof
rank: 1000
is_a: inchi_sublayer_in_main_layer
alias: inchi_atom_connections_sublayer
domain_of:
- PolyatomicEntity
- StandardInchiObject
- EntityWithConnectivitySpecificied
range: string
pattern: ^c.*