Slot: inchi atom connections sublayer (inchi_atom_connections_sublayer)
The atoms in the chemical formula (except for hydrogens) are numbered in sequence; this sublayer describes which atoms are connected by bonds to which other ones.
URI: chemrof:inchi_atom_connections_sublayer
Inheritance
- information_property
- inchi_component
- inchi_sublayer
- inchi_sublayer_in_main_layer
- inchi_atom_connections_sublayer
- inchi_sublayer_in_main_layer
- inchi_sublayer
- inchi_component
Applicable Classes
Name | Description | Modifies Slot |
---|---|---|
Allotrope | A molecule consisting of atoms of the same element | no |
PreciseChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
Zwitterion | A molecule that has both a positive and negative charges but is net neutral | no |
Peptide | no | |
ChemicalGroup | no | |
NucleotideSequenceInterval | no | |
NonSpeciesMolecule | A molecule in which the units are not identical | no |
Glycan | A macromolecule consisting of a large number of monosaccharides linked glycos... | no |
SupramolecularPolymer | polymeric arrays of monomeric units that are connected by reversible and high... | no |
NaturalProduct | no | |
NetUnchargedMolecule | A molecule that has no net charge | no |
MolecularSubsequence | no | |
Macromolecule | A large molecule, such as a polymer, lipid, or macrocycle | no |
SmallMolecule | A molecule characterized by availability in small-molecule databases | no |
RNASequenceInterval | no | |
EntityWithConnectivitySpecificied | A mixin for an entity that consists of two or more atom occurrences where the... | no |
ChemicalSalt | a chemical compound consisting of an ionic assembly of cations and anions | no |
MolecularComplex | A molecular complex is a chemical complex composed of at least one weakly int... | no |
MolecularComponent | A proper part of a molecule that is larger than an atom | no |
Protein | no | |
AminoAcidSequenceInterval | no | |
PolymerPart | no | |
Monomer | no | |
Molecule | A chemical entity that consists of two or more atoms where all atoms are conn... | no |
FunctionalGroup | no | |
PolyatomicEntity | Any chemical entity consisting of more than one atom | yes |
SequenceInterval | a chain of connected monomers in a linear polymer - for example, a sub-region... | no |
Enantiomer | one of two stereoisomers of a chiral molecule that are mirror images | no |
RacemicMixture | a chemical compound that has equal amounts of left- and right-handed enantiom... | no |
Moiety | a named part of a molecule | no |
PolyatomicIon | A molecule that has a net charge | no |
ChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
Copolymer | a polymer with a more than one type of repeating unit | no |
MoleculeByChargeState | A molecule that has a charge state specified | no |
Ester | An ester is a chemical compound derived from an acid (organic or inorganic) i... | no |
Homopolymer | a polymer with a single type of repeating unit | no |
StandardInchiObject | no | |
MolecularSpecies | A molecule in which the units are identical | no |
MonomolecularPolymer | A macromolecule composed of repeating subunits | no |
NeutralMolecule | A molecule that has no net charge and is not a zwitterion | no |
DNASequenceInterval | no | |
ImpreciseChemicalMixture | A macroscopic polyatomic entity that consists of multiple chemical entities w... | no |
MolecularCation | A polyatomic ion that is positive | no |
MolecularAnion | A polyatomic ion that is negative | no |
Stereoisomer | no |
Properties
-
Range: String
-
Regex pattern:
^c.*
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/chemrof
Mappings
Mapping Type | Mapped Value |
---|---|
self | chemrof:inchi_atom_connections_sublayer |
native | chemrof:inchi_atom_connections_sublayer |
LinkML Source
name: inchi_atom_connections_sublayer
description: The atoms in the chemical formula (except for hydrogens) are numbered
in sequence; this sublayer describes which atoms are connected by bonds to which
other ones.
title: inchi atom connections sublayer
from_schema: https://w3id.org/chemrof
rank: 1000
is_a: inchi_sublayer_in_main_layer
alias: inchi_atom_connections_sublayer
domain_of:
- PolyatomicEntity
- StandardInchiObject
- EntityWithConnectivitySpecificied
range: string
pattern: ^c.*