Slot: IUPAC condensed representation (iupac_condensed_representation)

The condensed form of the IUPAC nomenclature for carbohydrates, in which each monosaccharide is written using its three-letter abbreviation and each glycosidic linkage is written in parentheses as an anomeric descriptor followed by the two carbon positions joined. Branches are written in square brackets. This is the notation most commonly used in the glycobiology literature.

URI: chemrof:iupac_condensed_representation Alias: iupac_condensed_representation

Inheritance

information_property
- chemical_representation
  - carbohydrate_representation
    - iupac_condensed_representation

Applicable Classes

Name	Description	Modifies Slot
Glycan	A molecule consisting of monosaccharide residues joined to one another by gly...	no

Properties

Range: ChemicalEncoding

Aliases

IUPAC condensed

Examples

Value
Gal(b1-4)[Fuc(a1-3)]GlcNAc

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/chemrof

Mappings

Mapping Type	Mapped Value
self	chemrof:iupac_condensed_representation
native	chemrof:iupac_condensed_representation

LinkML Source

name: iupac_condensed_representation
description: The condensed form of the IUPAC nomenclature for carbohydrates, in which
  each monosaccharide is written using its three-letter abbreviation and each glycosidic
  linkage is written in parentheses as an anomeric descriptor followed by the two
  carbon positions joined. Branches are written in square brackets. This is the notation
  most commonly used in the glycobiology literature.
title: IUPAC condensed representation
examples:
- value: Gal(b1-4)[Fuc(a1-3)]GlcNAc
  description: Lewis X trisaccharide
from_schema: https://w3id.org/chemrof
see_also:
- https://www.ncbi.nlm.nih.gov/glycans/snfg.html
aliases:
- IUPAC condensed
rank: 1000
is_a: carbohydrate_representation
domain: ChemicalEntity
alias: iupac_condensed_representation
domain_of:
- Glycan
range: ChemicalEncoding