Slot: kegg chemical function representation (kegg_chemical_function_representation)
A multiline format used by the KEGG GLYCAN database and represents glycans as graphs. Monosaccharides are represented as nodes, and glycosidic linkages are represented as edges. Each node is given a unique number, and x- and y- coordinates are specified such that the glycan structure can be drawn on a 2D plane. Edge information uses the node numbers to specify anomeric and carbon number information. Monosaccharide names are specified as text, and no particular rules are specified to represent these names.
URI: chemrof:kegg_chemical_function_representation Alias: kegg_chemical_function_representation
Inheritance
- information_property
- chemical_representation
- carbohydrate_representation
- kegg_chemical_function_representation
- carbohydrate_representation
- chemical_representation
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Glycan | A molecule consisting of monosaccharide residues joined to one another by gly... | no |
Properties
- Range: ChemicalEncoding
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/chemrof
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | chemrof:kegg_chemical_function_representation |
| native | chemrof:kegg_chemical_function_representation |
LinkML Source
name: kegg_chemical_function_representation
description: A multiline format used by the KEGG GLYCAN database and represents glycans
as graphs. Monosaccharides are represented as nodes, and glycosidic linkages are
represented as edges. Each node is given a unique number, and x- and y- coordinates
are specified such that the glycan structure can be drawn on a 2D plane. Edge information
uses the node numbers to specify anomeric and carbon number information. Monosaccharide
names are specified as text, and no particular rules are specified to represent
these names.
title: kegg chemical function representation
from_schema: https://w3id.org/chemrof
rank: 1000
is_a: carbohydrate_representation
domain: ChemicalEntity
alias: kegg_chemical_function_representation
domain_of:
- Glycan
range: ChemicalEncoding