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Slot: name (name)

name of chemical entity. E.g. nickel, carbon-16

URI: rdfs:label Alias: name

Inheritance

Applicable Classes

Name Description Modifies Slot
ChemicalMixture A polyatomic entity that consists of two or more parts that are weakly bound,... no
MolecularComplex A molecular complex is a chemical complex composed of at least one weakly int... no
MoleculeGroupingClass A grouping class that classifies molecules no
ImpreciseChemicalMixture A macroscopic polyatomic entity that consists of multiple chemical entities w... no
Glycan A macromolecule consisting of a large number of monosaccharides linked glycos... no
PreciseChemicalMixture A polyatomic entity that consists of two or more parts that are weakly bound,... no
Material A substance composed of repeated chemical units that has a specific arrangeme... no
MolecularSpecies A molecule in which the units are identical no
Mineral no
MolecularDerivativeGroupingClass A grouping class defined as a derivative of another molecule or molecular gro... yes
Homopolymer a polymer with a single type of repeating unit no
AcidBaseConflationClass A molecule grouping class that can groups an acid together with all its conju... no
Allotrope A molecule consisting of atoms of the same element no
Molecule A chemical entity that consists of two or more atoms where all atoms are conn... no
Peptide no
MonomolecularPolymer A macromolecule composed of repeating subunits no
NucleotideSequenceInterval no
Isotope A specific subtype of an atom with a specified neutron number no
Protein A macromolecule composed of one or more polypeptide chains of amino acids tha... no
AtomAnion A monoatomic ion that is negative no
AminoAcidSequenceInterval no
AtomCation A monoatomic ion that is positive, e no
NeutralMolecule A molecule that has no net charge and is not a zwitterion no
ReactionGroupingClass A grouping class for reactions, for example, dehalogenase; breaking of covale... no
NaturalProduct no
AtomGroupingClass A grouping class that classifies atoms no
SmallMolecule A molecule characterized by availability in small-molecule databases no
Reaction Reaction no
AcidAnionGroupingClass A molecule grouping class that groups the different ion forms of the base of ... yes
FullySpecifiedAtom An atom type that has atomic number, charge, and neutron number stated (equiv... no
Atom A chemical entity consisting of exactly one atomic nucleus and the electron(s... no
PhysicochemicalEntity A discrete chemical structure, material structure, or subatomic particle type no
Radionuclide an atom that has excess nuclear energy, making it unstable no
MonomericPolymericGroupingClass no
ChemicalGroup no
AtomGroupingByProperty Example: metal atom no
MoleculeGroupingClassDefinedByComponents A grouping class defined as an exhaustive list of components no
GroupingClass Instances of this class represent generic concepts that can be used to group... no
Isobar Isobars are atoms (nuclides) of different chemical elements that have the sam... no
ChemicalSaltByCation A grouping class for a chemical salt named by cation yes
AtomIonicForm an atom type in which only charge state is specified, designated by the eleme... no
PartiallySpecifiedAtom An atom type that only has a subset of properties (has atomic number, charge,... no
FunctionalGroup no
Nuclide an atomic species characterized by the specific constitution of its nucleus no
RacemicMixture a chemical compound that has equal amounts of left- and right-handed enantiom... no
SequenceInterval a chain of connected monomers in a linear polymer - for example, a sub-region... no
SubatomicParticle A chemical entity below the granularity of an atom no
ChemicalGroupingByCharge A grouping class that refines a charge-neutral entity no
NetUnchargedMolecule A molecule that has no net charge no
ChemicalElement generic form of an atom, with unspecified neutron or charge no
MoleculeByChargeState A molecule that has a charge state specified no
PolymerPart no
Macromolecule A large molecule, such as a polymer, lipid, or macrocycle no
Monomer no
IsomeraseReaction A reaction that converts a molecule from one isomer to another no
AtomGroupingByPeriodicTableGroup Example: p-block atom no
SupramolecularPolymer polymeric arrays of monomeric units that are connected by reversible and high... no
MolecularComponent A proper part of a molecule that is larger than an atom no
DNASequenceInterval no
MoleculeGroupingClassDefinedByAdditionOfAGroup A grouping class defined in terms of a derivative of a molecule and the addit... no
PolyatomicEntity Any chemical entity consisting of more than one atom no
MaterialGroupingClass A grouping class that classifies materials no
Moiety a named part of a molecule no
Ester An ester is a chemical compound derived from an acid (organic or inorganic) i... no
MolecularComponentGroupingClass A grouping class that classifies molecular components no
AtomGroupingByPeriodicTableBlock Example: group 13 atom no
MonoatomicIon An atom type that has a charge no
GeneralAcidBaseGroupingClass A molecule grouping class that can groups an acid together with all its conju... no
Stereoisomer no
GroupingClassForAcidsOrBases no
ChemicalGroupingClass Instances of this class represent generic chemical concepts that can be used ... no
NonSpeciesMolecule A molecule in which the units are not identical no
MolecularCation A polyatomic ion that is positive no
ChemicalEntity A discrete structure that is one or more atoms that can be described by a che... no
ChemicalSaltByAnion A grouping class for a chemical salt named by anion yes
MolecularSubsequence no
Zwitterion A molecule that has both a positive and negative charges but is net neutral no
GeneralizedMolecularStructureClass A molecule grouping class that can be written using a chemical formula using ... no
RNASequenceInterval no
AtomGroupingByPeriodicTablePlacement no
MolecularAnion A polyatomic ion that is negative no
DomainEntity A discrete, specific named entity in the domain of chemistry no
Copolymer a polymer with a more than one type of repeating unit no
ChemicalSalt a chemical compound consisting of an ionic assembly of cations and anions no
PhysicochemicalEntityGroupingClass no
UnchargedAtom An atom type that has no charge no
Enantiomer one of two stereoisomers of a chiral molecule that are mirror images no
PolyatomicIon A molecule that has a net charge no
ChemicalSaltGroupingClass A grouping class for a chemical salt yes
AtomOccurrence An occurrence of an atom in the context of a particular molecule no
Nanomaterial A material of which a single unit is sized (in at least one dimension) betwee... no

Properties

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/chemrof

Mappings

Mapping Type Mapped Value
self rdfs:label
native chemrof:name
close bo:symbol

LinkML Source

name: name
description: name of chemical entity. E.g. nickel, carbon-16
title: name
from_schema: https://w3id.org/chemrof
close_mappings:
- bo:symbol
rank: 1000
is_a: information_property
slot_uri: rdfs:label
alias: name
domain_of:
- DomainEntity
- GroupingClass
- Atom
- AtomOccurrence
range: string