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Slot: name (name)

name of chemical entity. E.g. nickel, carbon-16

URI: rdfs:label Alias: name

Inheritance

Applicable Classes

Name Description Modifies Slot
AtomGroupingByPeriodicTablePlacement no
AtomGroupingByProperty Example: metal atom no
Stereoisomer no
SubatomicParticle A chemical entity below the granularity of an atom no
NetUnchargedMolecule A molecule that has no net charge no
MoleculeGroupingClassDefinedByAdditionOfAGroup A grouping class defined in terms of a derivative of a molecule and the addit... no
MolecularComponentGroupingClass A grouping class that classifies molecular components no
AtomAnion A monoatomic ion that is negative no
Material A substance composed of repeated chemical units that has a specific arrangeme... no
PartiallySpecifiedAtom An atom type that only has a subset of properties (has atomic number, charge,... no
Glycan A macromolecule consisting of a large number of monosaccharides linked glycos... no
AtomGroupingClass A grouping class that classifies atoms no
MolecularComponent A proper part of a molecule that is larger than an atom no
Zwitterion A molecule that has both a positive and negative charges but is net neutral no
AtomOccurrence An occurrence of an atom in the context of a particular molecule no
RNASequenceInterval no
ChemicalSalt a chemical compound consisting of an ionic assembly of cations and anions no
PolyatomicEntity Any chemical entity consisting of more than one atom no
SupramolecularPolymer polymeric arrays of monomeric units that are connected by reversible and high... no
Molecule A chemical entity that consists of two or more atoms where all atoms are conn... no
PhysicochemicalEntityGroupingClass no
GeneralizedMolecularStructureClass A molecule grouping class that can be written using a chemical formula using ... no
MonoatomicIon An atom type that has a charge no
MonomericPolymericGroupingClass no
ChemicalElement generic form of an atom, with unspecified neutron or charge no
FullySpecifiedAtom An atom type that has atomic number, charge, and neutron number stated (equiv... no
Atom A chemical entity consisting of exactly one atomic nucleus and the electron(s... no
DNASequenceInterval no
MonomolecularPolymer A macromolecule composed of repeating subunits no
MolecularAnion A polyatomic ion that is negative no
Macromolecule A large molecule, such as a polymer, lipid, or macrocycle no
FunctionalGroup no
AtomCation A monoatomic ion that is positive, e no
Radionuclide an atom that has excess nuclear energy, making it unstable no
MaterialGroupingClass A grouping class that classifies materials no
PhysicochemicalEntity A discrete chemical structure, material structure, or subatomic particle type no
NeutralMolecule A molecule that has no net charge and is not a zwitterion no
ChemicalGroup no
NaturalProduct no
Enantiomer one of two stereoisomers of a chiral molecule that are mirror images no
Isobar Isobars are atoms (nuclides) of different chemical elements that have the sam... no
NonSpeciesMolecule A molecule in which the units are not identical no
Copolymer a polymer with a more than one type of repeating unit no
AtomGroupingByPeriodicTableGroup Example: p-block atom no
AtomIonicForm an atom type in which only charge state is specified, designated by the eleme... no
GroupingClass Instances of this class represent generic concepts that can be used to group... no
SequenceInterval a chain of connected monomers in a linear polymer - for example, a sub-region... no
MolecularCation A polyatomic ion that is positive no
PreciseChemicalMixture A polyatomic entity that consists of two or more parts that are weakly bound,... no
Ester An ester is a chemical compound derived from an acid (organic or inorganic) i... no
ReactionGroupingClass A grouping class for reactions, for example, dehalogenase; breaking of covale... no
UnchargedAtom An atom type that has no charge no
PolyatomicIon A molecule that has a net charge no
MoleculeGroupingClass A grouping class that classifies molecules no
ChemicalEntity A discrete structure that is one or more atoms that can be described by a che... no
Homopolymer a polymer with a single type of repeating unit no
AcidBaseConflationClass A molecule grouping class that can groups an acid together with all its conju... no
AcidAnionGroupingClass A molecule grouping class that groups the different ion forms of the base of ... yes
ImpreciseChemicalMixture A macroscopic polyatomic entity that consists of multiple chemical entities w... no
AminoAcidSequenceInterval no
MolecularSpecies A molecule in which the units are identical no
GeneralAcidBaseGroupingClass A molecule grouping class that can groups an acid together with all its conju... no
Nanomaterial A material of which a single unit is sized (in at least one dimension) betwee... no
SmallMolecule A molecule characterized by availability in small-molecule databases no
Allotrope A molecule consisting of atoms of the same element no
ChemicalGroupingClass Instances of this class represent generic chemical concepts that can be used ... no
MolecularComplex A molecular complex is a chemical complex composed of at least one weakly int... no
NucleotideSequenceInterval no
MoleculeByChargeState A molecule that has a charge state specified no
Nuclide an atomic species characterized by the specific constitution of its nucleus no
MoleculeGroupingClassDefinedByComponents A grouping class defined as an exhaustive list of components no
MolecularSubsequence no
ChemicalSaltByAnion A grouping class for a chemical salt named by anion yes
ChemicalGroupingByCharge A grouping class that refines a charge-neutral entity no
ChemicalMixture A polyatomic entity that consists of two or more parts that are weakly bound,... no
IsomeraseReaction A reaction that converts a molecule from one isomer to another no
MolecularDerivativeGroupingClass A grouping class defined as a derivative of another molecule or molecular gro... yes
Isotope A specific subtype of an atom with a specified neutron number no
ChemicalSaltByCation A grouping class for a chemical salt named by cation yes
DomainEntity A discrete, specific named entity in the domain of chemistry no
Peptide no
Protein A macromolecule composed of one or more polypeptide chains of amino acids tha... no
Mineral no
AtomGroupingByPeriodicTableBlock Example: group 13 atom no
Monomer no
Reaction Reaction no
PolymerPart no
ChemicalSaltGroupingClass A grouping class for a chemical salt yes
Moiety a named part of a molecule no
RacemicMixture a chemical compound that has equal amounts of left- and right-handed enantiom... no
GroupingClassForAcidsOrBases no

Properties

Identifier and Mapping Information

Annotations

property value
owl AnnotationAssertion

Schema Source

  • from schema: https://w3id.org/chemrof

Mappings

Mapping Type Mapped Value
self rdfs:label
native chemrof:name
close bo:symbol

LinkML Source

name: name
annotations:
  owl:
    tag: owl
    value: AnnotationAssertion
description: name of chemical entity. E.g. nickel, carbon-16
title: name
from_schema: https://w3id.org/chemrof
close_mappings:
- bo:symbol
rank: 1000
is_a: information_property
slot_uri: rdfs:label
alias: name
domain_of:
- DomainEntity
- GroupingClass
- Atom
- AtomOccurrence
range: string