Slot: owl subclass of (owl_subclass_of)
Holds between C and P if C owl:subClassOf P. Note that in this model, most classes are metaclasses (see 'owl class'), where these metaclasses may represent groupings or specific countable elements or species. We provide two different sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by, which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon; iron is_a metal; serine is_a amino-acid)
URI: chemrof:owl_subclass_of Alias: owl_subclass_of
Inheritance
- classification_relationship
- owl_subclass_of
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| MonoatomicIon | An atom type that has a charge | no |
| PolymerPart | no | |
| NucleotideSequenceInterval | no | |
| Stereoisomer | no | |
| NetUnchargedMolecule | A molecule that has no net charge | no |
| ChemicalSalt | a chemical compound consisting of an ionic assembly of cations and anions | no |
| RNASequenceInterval | no | |
| Radionuclide | an atom that has excess nuclear energy, making it unstable | no |
| AtomGroupingByProperty | Example: metal atom | no |
| ChemicalGroupingClass | Instances of this class represent generic chemical concepts that can be used ... | no |
| NonSpeciesMolecule | A molecule in which the units are not identical | no |
| NaturalProduct | no | |
| AtomGroupingClass | A grouping class that classifies atoms | no |
| MonomericPolymericGroupingClass | no | |
| RacemicMixture | a chemical compound that has equal amounts of left- and right-handed enantiom... | no |
| AcidAnionGroupingClass | A molecule grouping class that groups the different ion forms of the base of ... | no |
| Moiety | a named part of a molecule | no |
| Isobar | Isobars are atoms (nuclides) of different chemical elements that have the sam... | no |
| ChemicalSimilarity | A relationship between two or more chemical entities where there is some degr... | no |
| MolecularComponent | A proper part of a molecule that is larger than an atom | no |
| Homopolymer | a polymer with a single type of repeating unit | no |
| SupramolecularPolymer | polymeric arrays of monomeric units that are connected by reversible and high... | no |
| ChemicalElement | generic form of an atom, with unspecified neutron or charge | no |
| ChemicalRole | A characteristic of a chemical entity that is realized under particular condi... | no |
| PhysicochemicalEntityGroupingClass | no | |
| Glycan | A macromolecule consisting of a large number of monosaccharides linked glycos... | no |
| PolyatomicEntity | Any chemical entity consisting of more than one atom | no |
| MonomolecularPolymer | A macromolecule composed of repeating subunits | no |
| Zwitterion | A molecule that has both a positive and negative charges but is net neutral | no |
| AtomIonicForm | an atom type in which only charge state is specified, designated by the eleme... | no |
| GeneralAcidBaseGroupingClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| MolecularSubsequence | no | |
| Protein | A macromolecule composed of one or more polypeptide chains of amino acids tha... | no |
| TanimotoSimilarity | no | |
| ChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| Nuclide | an atomic species characterized by the specific constitution of its nucleus | no |
| AcidBaseConflationClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| Peptide | no | |
| PartiallySpecifiedAtom | An atom type that only has a subset of properties (has atomic number, charge,... | no |
| Isotope | A specific subtype of an atom with a specified neutron number | no |
| ChemicalSaltGroupingClass | A grouping class for a chemical salt | no |
| MaterialGroupingClass | A grouping class that classifies materials | no |
| MoleculeGroupingClassDefinedByAdditionOfAGroup | A grouping class defined in terms of a derivative of a molecule and the addit... | no |
| ChemicalRelationship | A reified relationship | no |
| FullySpecifiedAtom | An atom type that has atomic number, charge, and neutron number stated (equiv... | no |
| ReactionParticipant | Instances of this link a reaction to a chemical entity participant | no |
| PolyatomicIon | A molecule that has a net charge | no |
| ChemicalSaltByAnion | A grouping class for a chemical salt named by anion | no |
| FunctionalGroup | no | |
| MolecularComplex | A molecular complex is a chemical complex composed of at least one weakly int... | no |
| ChemicalGroup | no | |
| SubatomicParticleOccurrence | no | |
| AtomGroupingByPeriodicTablePlacement | no | |
| MoleculeGroupingClass | A grouping class that classifies molecules | no |
| MolecularDerivativeGroupingClass | A grouping class defined as a derivative of another molecule or molecular gro... | no |
| AminoAcidSequenceInterval | no | |
| SmallMolecule | A molecule characterized by availability in small-molecule databases | no |
| ChemicalSaltByCation | A grouping class for a chemical salt named by cation | no |
| MolecularComponentGroupingClass | A grouping class that classifies molecular components | no |
| Monomer | no | |
| PolymerRepeatUnit | An abstract part of a polymer that is all instances of a repeated monomer of ... | no |
| ImpreciseChemicalMixture | A macroscopic polyatomic entity that consists of multiple chemical entities w... | no |
| MoleculePairwiseSimilarity | no | |
| Allotrope | A molecule consisting of atoms of the same element | no |
| MolecularCation | A polyatomic ion that is positive | no |
| MolecularSpecies | A molecule in which the units are identical | no |
| SequenceInterval | a chain of connected monomers in a linear polymer - for example, a sub-region... | no |
| Atom | A chemical entity consisting of exactly one atomic nucleus and the electron(s... | no |
| AtomAnion | A monoatomic ion that is negative | no |
| UnchargedAtom | An atom type that has no charge | no |
| ChemicalEntity | A discrete structure that is one or more atoms that can be described by a che... | no |
| ProportionalPart | A part of a complex mixture that is of uniform composition | no |
| OwlClass | instances of this class mixin are OWL Classes | no |
| AtomicBond | A connection between two atoms | no |
| MoleculeGroupingClassDefinedByComponents | A grouping class defined as an exhaustive list of components | no |
| GeneralizedMolecularStructureClass | A molecule grouping class that can be written using a chemical formula using ... | no |
| AtomGroupingByPeriodicTableBlock | Example: group 13 atom | no |
| Enantiomer | one of two stereoisomers of a chiral molecule that are mirror images | no |
| DNASequenceInterval | no | |
| Molecule | A chemical entity that consists of two or more atoms where all atoms are conn... | no |
| AtomCation | A monoatomic ion that is positive, e | no |
| PreciseChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| AtomOccurrence | An occurrence of an atom in the context of a particular molecule | no |
| AtomGroupingByPeriodicTableGroup | Example: p-block atom | no |
| ReactionGroupingClass | A grouping class for reactions, for example, dehalogenase; breaking of covale... | no |
| MolecularAnion | A polyatomic ion that is negative | no |
| GroupingClass | Instances of this class represent generic concepts that can be used to group... | no |
| Macromolecule | A large molecule, such as a polymer, lipid, or macrocycle | no |
| Copolymer | a polymer with a more than one type of repeating unit | no |
| MoleculeByChargeState | A molecule that has a charge state specified | no |
| GroupingClassForAcidsOrBases | no | |
| ChemicalGroupingByCharge | A grouping class that refines a charge-neutral entity | no |
| Ester | An ester is a chemical compound derived from an acid (organic or inorganic) i... | no |
| NeutralMolecule | A molecule that has no net charge and is not a zwitterion | no |
Mixin Usage
| mixed into | description | range | domain |
|---|---|---|---|
| subtype_of | A subtype_of relationship holds between C and P if C is a more specialized fo... | OwlClass | GroupingClass |
| classified_by | A subtype_of relationship holds between I and C if I is a specific entity of ... | OwlClass |
Properties
-
Range: OwlClass
-
Mixin: True
Aliases
- is a
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/chemrof
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | chemrof:owl_subclass_of |
| native | chemrof:owl_subclass_of |
| exact | rdfs:subClassOf |
| narrow | bo:family |
LinkML Source
name: owl_subclass_of
description: 'Holds between C and P if C owl:subClassOf P. Note that in this model,
most classes are metaclasses (see ''owl class''), where these metaclasses may represent
*groupings* or specific countable elements or species. We provide two different
sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping
classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by,
which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon;
iron is_a metal; serine is_a amino-acid)'
title: owl subclass of
from_schema: https://w3id.org/chemrof
aliases:
- is a
exact_mappings:
- rdfs:subClassOf
narrow_mappings:
- bo:family
rank: 1000
is_a: classification_relationship
mixin: true
domain: OwlClass
alias: owl_subclass_of
domain_of:
- OwlClass
range: OwlClass