Slot: owl subclass of (owl_subclass_of)
Holds between C and P if C owl:subClassOf P. Note that in this model, most classes are metaclasses (see 'owl class'), where these metaclasses may represent groupings or specific countable elements or species. We provide two different sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by, which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon; iron is_a metal; serine is_a amino-acid)
URI: chemrof:owl_subclass_of Alias: owl_subclass_of
Inheritance
- classification_relationship
- owl_subclass_of
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| ChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| MolecularComplex | A molecular complex is a chemical complex composed of at least one weakly int... | no |
| MoleculeGroupingClass | A grouping class that classifies molecules | no |
| ImpreciseChemicalMixture | A macroscopic polyatomic entity that consists of multiple chemical entities w... | no |
| Glycan | A macromolecule consisting of a large number of monosaccharides linked glycos... | no |
| PreciseChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| MolecularSpecies | A molecule in which the units are identical | no |
| MolecularDerivativeGroupingClass | A grouping class defined as a derivative of another molecule or molecular gro... | no |
| Homopolymer | a polymer with a single type of repeating unit | no |
| AcidBaseConflationClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| Allotrope | A molecule consisting of atoms of the same element | no |
| Molecule | A chemical entity that consists of two or more atoms where all atoms are conn... | no |
| Peptide | no | |
| MonomolecularPolymer | A macromolecule composed of repeating subunits | no |
| NucleotideSequenceInterval | no | |
| Isotope | A specific subtype of an atom with a specified neutron number | no |
| Protein | A macromolecule composed of one or more polypeptide chains of amino acids tha... | no |
| AtomAnion | A monoatomic ion that is negative | no |
| AminoAcidSequenceInterval | no | |
| AtomCation | A monoatomic ion that is positive, e | no |
| NeutralMolecule | A molecule that has no net charge and is not a zwitterion | no |
| ReactionGroupingClass | A grouping class for reactions, for example, dehalogenase; breaking of covale... | no |
| NaturalProduct | no | |
| AtomGroupingClass | A grouping class that classifies atoms | no |
| SmallMolecule | A molecule characterized by availability in small-molecule databases | no |
| AcidAnionGroupingClass | A molecule grouping class that groups the different ion forms of the base of ... | no |
| FullySpecifiedAtom | An atom type that has atomic number, charge, and neutron number stated (equiv... | no |
| AtomicBond | A connection between two atoms | no |
| ProportionalPart | A part of a complex mixture that is of uniform composition | no |
| Atom | A chemical entity consisting of exactly one atomic nucleus and the electron(s... | no |
| Radionuclide | an atom that has excess nuclear energy, making it unstable | no |
| MonomericPolymericGroupingClass | no | |
| ChemicalGroup | no | |
| AtomGroupingByProperty | Example: metal atom | no |
| MoleculeGroupingClassDefinedByComponents | A grouping class defined as an exhaustive list of components | no |
| GroupingClass | Instances of this class represent generic concepts that can be used to group... | no |
| SubatomicParticleOccurrence | no | |
| Isobar | Isobars are atoms (nuclides) of different chemical elements that have the sam... | no |
| ChemicalSaltByCation | A grouping class for a chemical salt named by cation | no |
| AtomIonicForm | an atom type in which only charge state is specified, designated by the eleme... | no |
| PartiallySpecifiedAtom | An atom type that only has a subset of properties (has atomic number, charge,... | no |
| TanimotoSimilarity | no | |
| FunctionalGroup | no | |
| Nuclide | an atomic species characterized by the specific constitution of its nucleus | no |
| PolymerRepeatUnit | An abstract part of a polymer that is all instances of a repeated monomer of ... | no |
| RacemicMixture | a chemical compound that has equal amounts of left- and right-handed enantiom... | no |
| SequenceInterval | a chain of connected monomers in a linear polymer - for example, a sub-region... | no |
| ChemicalGroupingByCharge | A grouping class that refines a charge-neutral entity | no |
| NetUnchargedMolecule | A molecule that has no net charge | no |
| ChemicalElement | generic form of an atom, with unspecified neutron or charge | no |
| MoleculeByChargeState | A molecule that has a charge state specified | no |
| PolymerPart | no | |
| Macromolecule | A large molecule, such as a polymer, lipid, or macrocycle | no |
| Monomer | no | |
| ChemicalSimilarity | A relationship between two or more chemical entities where there is some degr... | no |
| AtomGroupingByPeriodicTableGroup | Example: p-block atom | no |
| SupramolecularPolymer | polymeric arrays of monomeric units that are connected by reversible and high... | no |
| MolecularComponent | A proper part of a molecule that is larger than an atom | no |
| OwlClass | instances of this class mixin are OWL Classes | no |
| DNASequenceInterval | no | |
| ReactionParticipant | Instances of this link a reaction to a chemical entity participant | no |
| MoleculeGroupingClassDefinedByAdditionOfAGroup | A grouping class defined in terms of a derivative of a molecule and the addit... | no |
| PolyatomicEntity | Any chemical entity consisting of more than one atom | no |
| MaterialGroupingClass | A grouping class that classifies materials | no |
| Moiety | a named part of a molecule | no |
| Ester | An ester is a chemical compound derived from an acid (organic or inorganic) i... | no |
| MolecularComponentGroupingClass | A grouping class that classifies molecular components | no |
| AtomGroupingByPeriodicTableBlock | Example: group 13 atom | no |
| MoleculePairwiseSimilarity | no | |
| MonoatomicIon | An atom type that has a charge | no |
| GeneralAcidBaseGroupingClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| Stereoisomer | no | |
| GroupingClassForAcidsOrBases | no | |
| ChemicalGroupingClass | Instances of this class represent generic chemical concepts that can be used ... | no |
| NonSpeciesMolecule | A molecule in which the units are not identical | no |
| MolecularCation | A polyatomic ion that is positive | no |
| ChemicalEntity | A discrete structure that is one or more atoms that can be described by a che... | no |
| ChemicalSaltByAnion | A grouping class for a chemical salt named by anion | no |
| MolecularSubsequence | no | |
| Zwitterion | A molecule that has both a positive and negative charges but is net neutral | no |
| GeneralizedMolecularStructureClass | A molecule grouping class that can be written using a chemical formula using ... | no |
| RNASequenceInterval | no | |
| AtomGroupingByPeriodicTablePlacement | no | |
| MolecularAnion | A polyatomic ion that is negative | no |
| ChemicalRelationship | A reified relationship | no |
| Copolymer | a polymer with a more than one type of repeating unit | no |
| ChemicalSalt | a chemical compound consisting of an ionic assembly of cations and anions | no |
| ChemicalRole | A characteristic of a chemical entity that is realized under particular condi... | no |
| PhysicochemicalEntityGroupingClass | no | |
| UnchargedAtom | An atom type that has no charge | no |
| Enantiomer | one of two stereoisomers of a chiral molecule that are mirror images | no |
| PolyatomicIon | A molecule that has a net charge | no |
| ChemicalSaltGroupingClass | A grouping class for a chemical salt | no |
| AtomOccurrence | An occurrence of an atom in the context of a particular molecule | no |
Mixin Usage
| mixed into | description | range | domain |
|---|---|---|---|
| subtype_of | A subtype_of relationship holds between C and P if C is a more specialized fo... | OwlClass | GroupingClass |
| classified_by | A subtype_of relationship holds between I and C if I is a specific entity of ... | OwlClass |
Properties
-
Range: OwlClass
-
Mixin: True
Aliases
- is a
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/chemrof
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | chemrof:owl_subclass_of |
| native | chemrof:owl_subclass_of |
| exact | rdfs:subClassOf |
| narrow | bo:family |
LinkML Source
name: owl_subclass_of
description: 'Holds between C and P if C owl:subClassOf P. Note that in this model,
most classes are metaclasses (see ''owl class''), where these metaclasses may represent
*groupings* or specific countable elements or species. We provide two different
sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping
classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by,
which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon;
iron is_a metal; serine is_a amino-acid)'
title: owl subclass of
from_schema: https://w3id.org/chemrof
aliases:
- is a
exact_mappings:
- rdfs:subClassOf
narrow_mappings:
- bo:family
rank: 1000
is_a: classification_relationship
mixin: true
domain: OwlClass
alias: owl_subclass_of
domain_of:
- OwlClass
range: OwlClass