Slot: owl subclass of (owl_subclass_of)
Holds between C and P if C owl:subClassOf P. Note that in this model, most classes are metaclasses (see 'owl class'), where these metaclasses may represent groupings or specific countable elements or species. We provide two different sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by, which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon; iron is_a metal; serine is_a amino-acid)
URI: chemrof:owl_subclass_of Alias: owl_subclass_of
Inheritance
- classification_relationship
- owl_subclass_of
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| AtomOccurrence | An occurrence of an atom in the context of a particular molecule | no |
| Radionuclide | an atom that has excess nuclear energy, making it unstable | no |
| MolecularSpecies | A molecule in which the units are identical | no |
| NeutralMolecule | A molecule that has no net charge and is not a zwitterion | no |
| Moiety | a named part of a molecule | no |
| NonSpeciesMolecule | A molecule in which the units are not identical | no |
| FullySpecifiedAtom | An atom type that has atomic number, charge, and neutron number stated (equiv... | no |
| MoleculeGroupingClass | A grouping class that classifies molecules | no |
| Isotope | A specific subtype of an atom with a specified neutron number | no |
| PreciseChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| ChemicalSaltByAnion | A grouping class for a chemical salt named by anion | no |
| ProportionalPart | A part of a complex mixture that is of uniform composition | no |
| OwlClass | instances of this class mixin are OWL Classes | no |
| PolyatomicEntity | Any chemical entity consisting of more than one atom | no |
| Glycan | A macromolecule consisting of a large number of monosaccharides linked glycos... | no |
| ReactionParticipant | Instances of this link a reaction to a chemical entity participant | no |
| Monomer | no | |
| GroupingClass | Instances of this class represent generic concepts that can be used to group... | no |
| MolecularComponent | A proper part of a molecule that is larger than an atom | no |
| TanimotoSimilarity | no | |
| ChemicalEntity | A discrete structure that is one or more atoms that can be described by a che... | no |
| Homopolymer | a polymer with a single type of repeating unit | no |
| UnchargedAtom | An atom type that has no charge | no |
| RNASequenceInterval | no | |
| DNASequenceInterval | no | |
| PartiallySpecifiedAtom | An atom type that only has a subset of properties (has atomic number, charge,... | no |
| GeneralAcidBaseGroupingClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| PhysicochemicalEntityGroupingClass | no | |
| ChemicalSimilarity | A relationship between two or more chemical entities where there is some degr... | no |
| Stereoisomer | no | |
| Peptide | no | |
| SequenceInterval | a chain of connected monomers in a linear polymer - for example, a sub-region... | no |
| AtomGroupingByProperty | Example: metal atom | no |
| MoleculeGroupingClassDefinedByComponents | A grouping class defined as an exhaustive list of components | no |
| ChemicalGroupingClass | Instances of this class represent generic chemical concepts that can be used ... | no |
| AtomGroupingByPeriodicTableBlock | Example: group 13 atom | no |
| AtomGroupingByPeriodicTableGroup | Example: p-block atom | no |
| ImpreciseChemicalMixture | A macroscopic polyatomic entity that consists of multiple chemical entities w... | no |
| PolymerPart | no | |
| ChemicalSalt | a chemical compound consisting of an ionic assembly of cations and anions | no |
| FunctionalGroup | no | |
| Protein | A macromolecule composed of one or more polypeptide chains of amino acids tha... | no |
| NucleotideSequenceInterval | no | |
| ChemicalSaltByCation | A grouping class for a chemical salt named by cation | no |
| Nuclide | an atomic species characterized by the specific constitution of its nucleus | no |
| AtomicBond | A connection between two atoms | no |
| NetUnchargedMolecule | A molecule that has no net charge | no |
| MonomolecularPolymer | A macromolecule composed of repeating subunits | no |
| ChemicalGroup | no | |
| MonomericPolymericGroupingClass | no | |
| NaturalProduct | no | |
| MolecularComplex | A molecular complex is a chemical complex composed of at least one weakly int... | no |
| ReactionGroupingClass | A grouping class for reactions, for example, dehalogenase; breaking of covale... | no |
| AtomGroupingByPeriodicTablePlacement | no | |
| PolymerRepeatUnit | An abstract part of a polymer that is all instances of a repeated monomer of ... | no |
| Molecule | A chemical entity that consists of two or more atoms where all atoms are conn... | no |
| AtomCation | A monoatomic ion that is positive, e | no |
| ChemicalRole | A characteristic of a chemical entity that is realized under particular condi... | no |
| ChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| AtomGroupingClass | A grouping class that classifies atoms | no |
| ChemicalGroupingByCharge | A grouping class that refines a charge-neutral entity | no |
| Zwitterion | A molecule that has both a positive and negative charges but is net neutral | no |
| Copolymer | a polymer with a more than one type of repeating unit | no |
| ChemicalRelationship | A reified relationship | no |
| MoleculeByChargeState | A molecule that has a charge state specified | no |
| Ester | An ester is a chemical compound derived from an acid (organic or inorganic) i... | no |
| MolecularSubsequence | no | |
| GeneralizedMolecularStructureClass | A molecule grouping class that can be written using a chemical formula using ... | no |
| AtomAnion | A monoatomic ion that is negative | no |
| AtomIonicForm | an atom type in which only charge state is specified, designated by the eleme... | no |
| MonoatomicIon | An atom type that has a charge | no |
| MoleculeGroupingClassDefinedByAdditionOfAGroup | A grouping class defined in terms of a derivative of a molecule and the addit... | no |
| AcidAnionGroupingClass | A molecule grouping class that groups the different ion forms of the base of ... | no |
| Macromolecule | A large molecule, such as a polymer, lipid, or macrocycle | no |
| Allotrope | A molecule consisting of atoms of the same element | no |
| MoleculePairwiseSimilarity | no | |
| MolecularCation | A polyatomic ion that is positive | no |
| SupramolecularPolymer | polymeric arrays of monomeric units that are connected by reversible and high... | no |
| Atom | A chemical entity consisting of exactly one atomic nucleus and the electron(s... | no |
| Isobar | Isobars are atoms (nuclides) of different chemical elements that have the sam... | no |
| GroupingClassForAcidsOrBases | no | |
| MolecularDerivativeGroupingClass | A grouping class defined as a derivative of another molecule or molecular gro... | no |
| MaterialGroupingClass | A grouping class that classifies materials | no |
| AcidBaseConflationClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| SubatomicParticleOccurrence | no | |
| SmallMolecule | A molecule characterized by availability in small-molecule databases | no |
| RacemicMixture | a chemical compound that has equal amounts of left- and right-handed enantiom... | no |
| MolecularAnion | A polyatomic ion that is negative | no |
| ChemicalSaltGroupingClass | A grouping class for a chemical salt | no |
| AminoAcidSequenceInterval | no | |
| Enantiomer | one of two stereoisomers of a chiral molecule that are mirror images | no |
| PolyatomicIon | A molecule that has a net charge | no |
| ChemicalElement | generic form of an atom, with unspecified neutron or charge | no |
| MolecularComponentGroupingClass | A grouping class that classifies molecular components | no |
Mixin Usage
| mixed into | description | range | domain |
|---|---|---|---|
| subtype_of | A subtype_of relationship holds between C and P if C is a more specialized fo... | OwlClass | GroupingClass |
| classified_by | A subtype_of relationship holds between I and C if I is a specific entity of ... | OwlClass |
Properties
-
Range: OwlClass
-
Mixin: True
Aliases
- is a
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/chemrof
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | chemrof:owl_subclass_of |
| native | chemrof:owl_subclass_of |
| exact | rdfs:subClassOf |
| narrow | bo:family |
LinkML Source
name: owl_subclass_of
description: 'Holds between C and P if C owl:subClassOf P. Note that in this model,
most classes are metaclasses (see ''owl class''), where these metaclasses may represent
*groupings* or specific countable elements or species. We provide two different
sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping
classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by,
which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon;
iron is_a metal; serine is_a amino-acid)'
title: owl subclass of
from_schema: https://w3id.org/chemrof
aliases:
- is a
exact_mappings:
- rdfs:subClassOf
narrow_mappings:
- bo:family
rank: 1000
is_a: classification_relationship
mixin: true
domain: OwlClass
alias: owl_subclass_of
domain_of:
- OwlClass
range: OwlClass