Slot: owl subclass of (owl_subclass_of)
Holds between C and P if C owl:subClassOf P. Note that in this model, most classes are metaclasses (see 'owl class'), where these metaclasses may represent groupings or specific countable elements or species. We provide two different sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by, which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon; iron is_a metal; serine is_a amino-acid)
URI: chemrof:owl_subclass_of Alias: owl_subclass_of
Inheritance
- classification_relationship
- owl_subclass_of
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| AtomGroupingByPeriodicTablePlacement | no | |
| AtomGroupingByProperty | Example: metal atom | no |
| Stereoisomer | no | |
| NetUnchargedMolecule | A molecule that has no net charge | no |
| MoleculePairwiseSimilarity | no | |
| MoleculeGroupingClassDefinedByAdditionOfAGroup | A grouping class defined in terms of a derivative of a molecule and the addit... | no |
| MolecularComponentGroupingClass | A grouping class that classifies molecular components | no |
| AtomAnion | A monoatomic ion that is negative | no |
| SubatomicParticleOccurrence | no | |
| PartiallySpecifiedAtom | An atom type that only has a subset of properties (has atomic number, charge,... | no |
| Glycan | A macromolecule consisting of a large number of monosaccharides linked glycos... | no |
| ElementSourceRole | Role of providing a specific element to a biological or chemical system | no |
| AtomGroupingClass | A grouping class that classifies atoms | no |
| MolecularComponent | A proper part of a molecule that is larger than an atom | no |
| Zwitterion | A molecule that has both a positive and negative charges but is net neutral | no |
| AtomOccurrence | An occurrence of an atom in the context of a particular molecule | no |
| RNASequenceInterval | no | |
| ChemicalSalt | a chemical compound consisting of an ionic assembly of cations and anions | no |
| PolyatomicEntity | Any chemical entity consisting of more than one atom | no |
| SupramolecularPolymer | polymeric arrays of monomeric units that are connected by reversible and high... | no |
| Molecule | A chemical entity that consists of two or more atoms where all atoms are conn... | no |
| PhysicochemicalEntityGroupingClass | no | |
| GeneralizedMolecularStructureClass | A molecule grouping class that can be written using a chemical formula using ... | no |
| MonoatomicIon | An atom type that has a charge | no |
| MonomericPolymericGroupingClass | no | |
| ChemicalElement | generic form of an atom, with unspecified neutron or charge | no |
| FullySpecifiedAtom | An atom type that has atomic number, charge, and neutron number stated (equiv... | no |
| DNASequenceInterval | no | |
| Atom | A chemical entity consisting of exactly one atomic nucleus and the electron(s... | no |
| MonomolecularPolymer | A macromolecule composed of repeating subunits | no |
| MolecularAnion | A polyatomic ion that is negative | no |
| Macromolecule | A large molecule, such as a polymer, lipid, or macrocycle | no |
| FunctionalGroup | no | |
| AtomCation | A monoatomic ion that is positive, e | no |
| ChemicalSimilarity | A relationship between two or more chemical entities where there is some degr... | no |
| AtomicBond | A connection between two atoms | no |
| MineralNutrientRole | Role of providing a mineral nutrient, often as a trace element | no |
| VitaminRole | Role of providing a vitamin component | no |
| Radionuclide | an atom that has excess nuclear energy, making it unstable | no |
| MaterialGroupingClass | A grouping class that classifies materials | no |
| NeutralMolecule | A molecule that has no net charge and is not a zwitterion | no |
| ChemicalGroup | no | |
| NutrientRole | Role of providing nutritional value, such as vitamins or minerals | no |
| NaturalProduct | no | |
| OwlClass | instances of this class mixin are OWL Classes | no |
| ChemicalRole | A characteristic of a chemical entity that is realized under particular condi... | no |
| Enantiomer | one of two stereoisomers of a chiral molecule that are mirror images | no |
| Isobar | Isobars are atoms (nuclides) of different chemical elements that have the sam... | no |
| NonSpeciesMolecule | A molecule in which the units are not identical | no |
| Copolymer | a polymer with a more than one type of repeating unit | no |
| AtomGroupingByPeriodicTableGroup | Example: p-block atom | no |
| AtomIonicForm | an atom type in which only charge state is specified, designated by the eleme... | no |
| GroupingClass | Instances of this class represent generic concepts that can be used to group... | no |
| SequenceInterval | a chain of connected monomers in a linear polymer - for example, a sub-region... | no |
| MolecularCation | A polyatomic ion that is positive | no |
| ProportionalPart | A part of a complex mixture that is of uniform composition | no |
| PreciseChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| Ester | An ester is a chemical compound derived from an acid (organic or inorganic) i... | no |
| ReactionGroupingClass | A grouping class for reactions, for example, dehalogenase; breaking of covale... | no |
| UnchargedAtom | An atom type that has no charge | no |
| PolyatomicIon | A molecule that has a net charge | no |
| MoleculeGroupingClass | A grouping class that classifies molecules | no |
| ChemicalEntity | A discrete structure that is one or more atoms that can be described by a che... | no |
| Homopolymer | a polymer with a single type of repeating unit | no |
| IngredientRole | A role that a chemical entity plays as an ingredient in a mixture, such as ca... | no |
| AcidBaseConflationClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| AcidAnionGroupingClass | A molecule grouping class that groups the different ion forms of the base of ... | no |
| ImpreciseChemicalMixture | A macroscopic polyatomic entity that consists of multiple chemical entities w... | no |
| AminoAcidSequenceInterval | no | |
| MolecularSpecies | A molecule in which the units are identical | no |
| GeneralAcidBaseGroupingClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| TanimotoSimilarity | no | |
| SmallMolecule | A molecule characterized by availability in small-molecule databases | no |
| BufferRole | Role of maintaining pH in a solution or mixture | no |
| Allotrope | A molecule consisting of atoms of the same element | no |
| ChemicalGroupingClass | Instances of this class represent generic chemical concepts that can be used ... | no |
| MolecularComplex | A molecular complex is a chemical complex composed of at least one weakly int... | no |
| NucleotideSequenceInterval | no | |
| MoleculeByChargeState | A molecule that has a charge state specified | no |
| Nuclide | an atomic species characterized by the specific constitution of its nucleus | no |
| PolymerRepeatUnit | An abstract part of a polymer that is all instances of a repeated monomer of ... | no |
| MoleculeGroupingClassDefinedByComponents | A grouping class defined as an exhaustive list of components | no |
| MolecularSubsequence | no | |
| ChemicalSaltByAnion | A grouping class for a chemical salt named by anion | no |
| ChemicalGroupingByCharge | A grouping class that refines a charge-neutral entity | no |
| ChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| MolecularDerivativeGroupingClass | A grouping class defined as a derivative of another molecule or molecular gro... | no |
| ChemicalSaltByCation | A grouping class for a chemical salt named by cation | no |
| Isotope | A specific subtype of an atom with a specified neutron number | no |
| Peptide | no | |
| Protein | A macromolecule composed of one or more polypeptide chains of amino acids tha... | no |
| ReactionParticipant | Instances of this link a reaction to a chemical entity participant | no |
| SolventRole | Role of dissolving other components in a mixture | no |
| AtomGroupingByPeriodicTableBlock | Example: group 13 atom | no |
| Monomer | no | |
| PolymerPart | no | |
| ChemicalSaltGroupingClass | A grouping class for a chemical salt | no |
| Moiety | a named part of a molecule | no |
| RacemicMixture | a chemical compound that has equal amounts of left- and right-handed enantiom... | no |
| GroupingClassForAcidsOrBases | no | |
| ChemicalRelationship | A reified relationship | no |
Mixin Usage
| mixed into | description | range | domain |
|---|---|---|---|
| subtype_of | A subtype_of relationship holds between C and P if C is a more specialized fo... | OwlClass | GroupingClass |
| classified_by | A subtype_of relationship holds between I and C if I is a specific entity of ... | OwlClass |
Properties
-
Range: OwlClass
-
Mixin: True
Aliases
- is a
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/chemrof
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | chemrof:owl_subclass_of |
| native | chemrof:owl_subclass_of |
| exact | rdfs:subClassOf |
| narrow | bo:family |
LinkML Source
name: owl_subclass_of
description: 'Holds between C and P if C owl:subClassOf P. Note that in this model,
most classes are metaclasses (see ''owl class''), where these metaclasses may represent
*groupings* or specific countable elements or species. We provide two different
sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping
classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by,
which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon;
iron is_a metal; serine is_a amino-acid)'
title: owl subclass of
from_schema: https://w3id.org/chemrof
aliases:
- is a
exact_mappings:
- rdfs:subClassOf
narrow_mappings:
- bo:family
rank: 1000
is_a: classification_relationship
mixin: true
domain: OwlClass
alias: owl_subclass_of
domain_of:
- OwlClass
range: OwlClass