Slot: owl subclass of (owl_subclass_of)
Holds between C and P if C owl:subClassOf P. Note that in this model, most classes are metaclasses (see 'owl class'), where these metaclasses may represent groupings or specific countable elements or species. We provide two different sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by, which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon; iron is_a metal; serine is_a amino-acid)
Inheritance
- classification_relationship
- owl_subclass_of
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Allotrope | A molecule consisting of atoms of the same element | no |
| PhysicochemicalEntityGroupingClass | no | |
| MoleculeGroupingClass | A grouping class that classifies molecules | no |
| Atom | A chemical entity consisting of exactly one atomic nucleus and the electron(s... | no |
| NucleotideSequenceInterval | no | |
| NonSpeciesMolecule | A molecule in which the units are not identical | no |
| ReactionGroupingClass | A grouping class for reactions, for example, dehalogenase; breaking of covale... | no |
| ChemicalRelationship | A reified relationship | no |
| Macromolecule | A large molecule, such as a polymer, lipid, or macrocycle | no |
| GeneralAcidBaseGroupingClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| RNASequenceInterval | no | |
| AtomGroupingByProperty | Example: metal atom | no |
| GeneralizedMolecularStructureClass | A molecule grouping class that can be written using a chemical formula using ... | no |
| Protein | no | |
| Nuclide | an atomic species characterized by the specific constitution of its nucleus | no |
| PolymerRepeatUnit | An abstract part of a polymer that is all instances of a repeated monomer of ... | no |
| FunctionalGroup | no | |
| Copolymer | a polymer with a more than one type of repeating unit | no |
| AtomGroupingByPeriodicTableBlock | Example: group 13 atom | no |
| MolecularSpecies | A molecule in which the units are identical | no |
| ImpreciseChemicalMixture | A macroscopic polyatomic entity that consists of multiple chemical entities w... | no |
| ChemicalSaltByCation | A grouping class for a chemical salt named by cation | no |
| MolecularAnion | A polyatomic ion that is negative | no |
| MolecularDerivativeGroupingClass | A grouping class defined as a derivative of another molecule or molecular gro... | no |
| AtomicBond | A connection between two atoms | no |
| GroupingClassForAcidsOrBases | no | |
| Peptide | no | |
| ChemicalGroup | no | |
| AcidBaseConflationClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| NaturalProduct | no | |
| NetUnchargedMolecule | A molecule that has no net charge | no |
| ReactionParticipant | Instances of this link a reaction to a chemical entity participant | no |
| MolecularComplex | A molecular complex is a chemical complex composed of at least one weakly int... | no |
| OwlClass | instances of this class mixin are OWL Classes | no |
| GroupingClass | Instances of this class represent generic concepts that can be used to group... | no |
| MonomericPolymericGroupingClass | no | |
| MolecularComponent | A proper part of a molecule that is larger than an atom | no |
| AminoAcidSequenceInterval | no | |
| AtomGroupingByPeriodicTablePlacement | no | |
| MoleculeGroupingClassDefinedByComponents | A grouping class defined as an exhaustive list of components | no |
| AtomGroupingByPeriodicTableGroup | Example: p-block atom | no |
| Moiety | a named part of a molecule | no |
| PolyatomicIon | A molecule that has a net charge | no |
| AtomOccurrence | An occurrence of an atom in the context of a particular molecule | no |
| NeutralMolecule | A molecule that has no net charge and is not a zwitterion | no |
| MonomolecularPolymer | A macromolecule composed of repeating subunits | no |
| Isobar | Isobars are atoms (nuclides) of different chemical elements that have the sam... | no |
| DNASequenceInterval | no | |
| Ester | An ester is a chemical compound derived from an acid (organic or inorganic) i... | no |
| SubatomicParticleOccurrence | no | |
| Zwitterion | A molecule that has both a positive and negative charges but is net neutral | no |
| UnchargedAtom | An atom type that has no charge | no |
| ChemicalRole | A characteristic of a chemical entity that is realized under particular condi... | no |
| ChemicalSaltByAnion | A grouping class for a chemical salt named by anion | no |
| FullySpecifiedAtom | An atom type that has atomic number, charge, and neutron number stated (equiv... | no |
| SupramolecularPolymer | polymeric arrays of monomeric units that are connected by reversible and high... | no |
| AtomAnion | A monoatomic ion that is negative | no |
| SmallMolecule | A molecule characterized by availability in small-molecule databases | no |
| ChemicalSaltGroupingClass | A grouping class for a chemical salt | no |
| MolecularComponentGroupingClass | A grouping class that classifies molecular components | no |
| ChemicalSalt | a chemical compound consisting of an ionic assembly of cations and anions | no |
| TanimotoSimilarity | no | |
| PolymerPart | no | |
| Monomer | no | |
| Molecule | A chemical entity that consists of two or more atoms where all atoms are conn... | no |
| ChemicalGroupingClass | Instances of this class represent generic chemical concepts that can be used ... | no |
| PolyatomicEntity | Any chemical entity consisting of more than one atom | no |
| SequenceInterval | a chain of connected monomers in a linear polymer - for example, a sub-region... | no |
| Enantiomer | one of two stereoisomers of a chiral molecule that are mirror images | no |
| ChemicalGroupingByCharge | A grouping class that refines a charge-neutral entity | no |
| MaterialGroupingClass | A grouping class that classifies materials | no |
| Radionuclide | an atom that has excess nuclear energy, making it unstable | no |
| ProportionalPart | A part of a complex mixture that is of uniform composition | no |
| Homopolymer | a polymer with a single type of repeating unit | no |
| MolecularCation | A polyatomic ion that is positive | no |
| AcidAnionGroupingClass | A molecule grouping class that groups the different ion forms of the base of ... | no |
| Stereoisomer | no | |
| PreciseChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| PartiallySpecifiedAtom | An atom type that only has a subset of properties (has atomic number, charge,... | no |
| AtomGroupingClass | A grouping class that classifies atoms | no |
| AtomCation | A monoatomic ion that is positive, e | no |
| ChemicalEntity | A discrete structure that is one or more atoms that can be described by a che... | no |
| MoleculePairwiseSimilarity | no | |
| Glycan | A macromolecule consisting of a large number of monosaccharides linked glycos... | no |
| MonoatomicIon | An atom type that has a charge | no |
| MolecularSubsequence | no | |
| ChemicalSimilarity | A relationship between two or more chemical entities where there is some degr... | no |
| RacemicMixture | a chemical compound that has equal amounts of left- and right-handed enantiom... | no |
| Isotope | A specific subtype of an atom with a specified neutron number | no |
| ChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| MoleculeByChargeState | A molecule that has a charge state specified | no |
| AtomIonicForm | an atom type in which only charge state is specified, designated by the eleme... | no |
| MoleculeGroupingClassDefinedByAdditionOfAGroup | A grouping class defined in terms of a derivative of a molecule and the addit... | no |
| ChemicalElement | generic form of an atom, with unspecified neutron or charge | no |
Mixin Usage
| mixed into | description | range | domain |
|---|---|---|---|
| subtype_of | A subtype_of relationship holds between C and P if C is a more specialized fo... | OwlClass | GroupingClass |
| classified_by | A subtype_of relationship holds between I and C if I is a specific entity of ... | OwlClass |
Properties
-
Range: OwlClass
-
Mixin: True
Aliases
- is a
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/chemrof
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | chemrof:owl_subclass_of |
| native | chemrof:owl_subclass_of |
| exact | rdfs:subClassOf |
| narrow | bo:family |
LinkML Source
name: owl_subclass_of
description: 'Holds between C and P if C owl:subClassOf P. Note that in this model,
most classes are metaclasses (see ''owl class''), where these metaclasses may represent
*groupings* or specific countable elements or species. We provide two different
sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping
classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by,
which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon;
iron is_a metal; serine is_a amino-acid)'
title: owl subclass of
from_schema: https://w3id.org/chemrof
aliases:
- is a
exact_mappings:
- rdfs:subClassOf
narrow_mappings:
- bo:family
rank: 1000
is_a: classification_relationship
mixin: true
domain: OwlClass
alias: owl_subclass_of
domain_of:
- OwlClass
range: OwlClass