Slot: owl subclass of (owl_subclass_of)
Holds between C and P if C owl:subClassOf P. Note that in this model, most classes are metaclasses (see 'owl class'), where these metaclasses may represent groupings or specific countable elements or species. We provide two different sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by, which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon; iron is_a metal; serine is_a amino-acid)
URI: chemrof:owl_subclass_of Alias: owl_subclass_of
Inheritance
- classification_relationship
- owl_subclass_of
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Protein | A macromolecule composed of one or more polypeptide chains of amino acids tha... | no |
| PolymerPart | no | |
| ChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| AtomGroupingByPeriodicTablePlacement | no | |
| MaterialGroupingClass | A grouping class that classifies materials | no |
| ProportionalPart | A part of a complex mixture that is of uniform composition | no |
| Glycan | A macromolecule consisting of a large number of monosaccharides linked glycos... | no |
| MineralNutrientRole | Role of providing a mineral nutrient, often as a trace element | no |
| Ester | An ester is a chemical compound derived from an acid (organic or inorganic) i... | no |
| SupramolecularPolymer | polymeric arrays of monomeric units that are connected by reversible and high... | no |
| MoleculeGroupingClassDefinedByAdditionOfAGroup | A grouping class defined in terms of a derivative of a molecule and the addit... | no |
| NaturalProduct | no | |
| ChemicalSaltGroupingClass | A grouping class for a chemical salt | no |
| SequenceInterval | a chain of connected monomers in a linear polymer - for example, a sub-region... | no |
| MonomericPolymericGroupingClass | no | |
| NonSpeciesMolecule | A molecule in which the units are not identical | no |
| ChemicalSaltByAnion | A grouping class for a chemical salt named by anion | no |
| Allotrope | A molecule consisting of atoms of the same element | no |
| GeneralizedMolecularStructureClass | A molecule grouping class that can be written using a chemical formula using ... | no |
| AtomGroupingByProperty | Example: metal atom | no |
| NetUnchargedMolecule | A molecule that has no net charge | no |
| PhysicochemicalEntityGroupingClass | no | |
| AcidAnionGroupingClass | A molecule grouping class that groups the different ion forms of the base of ... | no |
| Peptide | no | |
| Isotope | A specific subtype of an atom with a specified neutron number | no |
| GroupingClass | Instances of this class represent generic concepts that can be used to group... | no |
| ElementSourceRole | Role of providing a specific element to a biological or chemical system | no |
| MolecularSpecies | A molecule in which the units are identical | no |
| MolecularComponentGroupingClass | A grouping class that classifies molecular components | no |
| SmallMolecule | A molecule characterized by availability in small-molecule databases | no |
| MolecularAnion | A polyatomic ion that is negative | no |
| FunctionalGroup | no | |
| OwlClass | instances of this class mixin are OWL Classes | no |
| AtomCation | A monoatomic ion that is positive, e | no |
| AtomGroupingClass | A grouping class that classifies atoms | no |
| ChemicalSalt | a chemical compound consisting of an ionic assembly of cations and anions | no |
| PolyatomicEntity | Any chemical entity consisting of more than one atom | no |
| ChemicalElement | generic form of an atom, with unspecified neutron or charge | no |
| Copolymer | a polymer with a more than one type of repeating unit | no |
| PolyatomicIon | A molecule that has a net charge | no |
| TanimotoSimilarity | no | |
| Stereoisomer | no | |
| ReactionParticipant | Instances of this link a reaction to a chemical entity participant | no |
| IngredientRole | A role that a chemical entity plays as an ingredient in a mixture, such as ca... | no |
| SubatomicParticleOccurrence | no | |
| AtomIonicForm | an atom type in which only charge state is specified, designated by the eleme... | no |
| Molecule | A chemical entity that consists of two or more atoms where all atoms are conn... | no |
| Zwitterion | A molecule that has both a positive and negative charges but is net neutral | no |
| ReactionGroupingClass | A grouping class for reactions, for example, dehalogenase; breaking of covale... | no |
| MolecularComponent | A proper part of a molecule that is larger than an atom | no |
| ChemicalRole | A characteristic of a chemical entity that is realized under particular condi... | no |
| DNASequenceInterval | no | |
| MolecularComplex | A molecular complex is a chemical complex composed of at least one weakly int... | no |
| Monomer | no | |
| RNASequenceInterval | no | |
| Radionuclide | an atom that has excess nuclear energy, making it unstable | no |
| MolecularSubsequence | no | |
| VitaminRole | Role of providing a vitamin component | no |
| NucleotideSequenceInterval | no | |
| NutrientRole | Role of providing nutritional value, such as vitamins or minerals | no |
| MonomolecularPolymer | A macromolecule composed of repeating subunits | no |
| PartiallySpecifiedAtom | An atom type that only has a subset of properties (has atomic number, charge,... | no |
| MolecularCation | A polyatomic ion that is positive | no |
| MolecularDerivativeGroupingClass | A grouping class defined as a derivative of another molecule or molecular gro... | no |
| UnchargedAtom | An atom type that has no charge | no |
| MoleculeGroupingClass | A grouping class that classifies molecules | no |
| PreciseChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| AcidBaseConflationClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| MoleculePairwiseSimilarity | no | |
| Enantiomer | one of two stereoisomers of a chiral molecule that are mirror images | no |
| AtomOccurrence | An occurrence of an atom in the context of a particular molecule | no |
| AtomGroupingByPeriodicTableBlock | Example: group 13 atom | no |
| MoleculeByChargeState | A molecule that has a charge state specified | no |
| RacemicMixture | a chemical compound that has equal amounts of left- and right-handed enantiom... | no |
| ImpreciseChemicalMixture | A macroscopic polyatomic entity that consists of multiple chemical entities w... | no |
| Atom | A chemical entity consisting of exactly one atomic nucleus and the electron(s... | no |
| AminoAcidSequenceInterval | no | |
| MoleculeGroupingClassDefinedByComponents | A grouping class defined as an exhaustive list of components | no |
| GroupingClassForAcidsOrBases | no | |
| AtomicBond | A connection between two atoms | no |
| Homopolymer | a polymer with a single type of repeating unit | no |
| ChemicalGroupingByCharge | A grouping class that refines a charge-neutral entity | no |
| AtomGroupingByPeriodicTableGroup | Example: p-block atom | no |
| Macromolecule | A large molecule, such as a polymer, lipid, or macrocycle | no |
| ChemicalRelationship | A reified relationship | no |
| SolventRole | Role of dissolving other components in a mixture | no |
| ChemicalEntity | A discrete structure that is one or more atoms that can be described by a che... | no |
| ChemicalGroupingClass | Instances of this class represent generic chemical concepts that can be used ... | no |
| Nuclide | an atomic species characterized by the specific constitution of its nucleus | no |
| MonoatomicIon | An atom type that has a charge | no |
| FullySpecifiedAtom | An atom type that has atomic number, charge, and neutron number stated (equiv... | no |
| Moiety | a named part of a molecule | no |
| NeutralMolecule | A molecule that has no net charge and is not a zwitterion | no |
| Isobar | Isobars are atoms (nuclides) of different chemical elements that have the sam... | no |
| ChemicalSimilarity | A relationship between two or more chemical entities where there is some degr... | no |
| BufferRole | Role of maintaining pH in a solution or mixture | no |
| ChemicalSaltByCation | A grouping class for a chemical salt named by cation | no |
| PolymerRepeatUnit | An abstract part of a polymer that is all instances of a repeated monomer of ... | no |
| ChemicalGroup | no | |
| GeneralAcidBaseGroupingClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| AtomAnion | A monoatomic ion that is negative | no |
Mixin Usage
| mixed into | description | range | domain |
|---|---|---|---|
| subtype_of | A subtype_of relationship holds between C and P if C is a more specialized fo... | OwlClass | GroupingClass |
| classified_by | A subtype_of relationship holds between I and C if I is a specific entity of ... | OwlClass |
Properties
-
Range: OwlClass
-
Mixin: True
Aliases
- is a
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/chemrof
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | chemrof:owl_subclass_of |
| native | chemrof:owl_subclass_of |
| exact | rdfs:subClassOf |
| narrow | bo:family |
LinkML Source
name: owl_subclass_of
description: 'Holds between C and P if C owl:subClassOf P. Note that in this model,
most classes are metaclasses (see ''owl class''), where these metaclasses may represent
*groupings* or specific countable elements or species. We provide two different
sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping
classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by,
which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon;
iron is_a metal; serine is_a amino-acid)'
title: owl subclass of
from_schema: https://w3id.org/chemrof
aliases:
- is a
exact_mappings:
- rdfs:subClassOf
narrow_mappings:
- bo:family
rank: 1000
is_a: classification_relationship
mixin: true
domain: OwlClass
alias: owl_subclass_of
domain_of:
- OwlClass
range: OwlClass