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Slot: name (name)

name of chemical entity. E.g. nickel, carbon-16

URI: rdfs:label Alias: name

Inheritance

Applicable Classes

Name Description Modifies Slot
Moiety a named part of a molecule no
MaterialGroupingClass A grouping class that classifies materials no
AcidBaseConflationClass A molecule grouping class that can groups an acid together with all its conju... no
NaturalProduct no
ChemicalSalt a chemical compound consisting of an ionic assembly of cations and anions no
Nuclide an atomic species characterized by the specific constitution of its nucleus no
DNASequenceInterval no
Copolymer a polymer with a more than one type of repeating unit no
MolecularComplex A molecular complex is a chemical complex composed of at least one weakly int... no
Radionuclide an atom that has excess nuclear energy, making it unstable no
AtomGroupingClass A grouping class that classifies atoms no
AtomAnion A monoatomic ion that is negative no
PolymerPart no
AtomGroupingByProperty Example: metal atom no
SubatomicParticle A chemical entity below the granularity of an atom no
MolecularSpecies A molecule in which the units are identical no
DomainEntity A discrete, specific named entity in the domain of chemistry no
MolecularComponentGroupingClass A grouping class that classifies molecular components no
PartiallySpecifiedAtom An atom type that only has a subset of properties (has atomic number, charge,... no
Nanomaterial A material of which a single unit is sized (in at least one dimension) betwee... no
MolecularCation A polyatomic ion that is positive no
NetUnchargedMolecule A molecule that has no net charge no
AtomGroupingByPeriodicTableGroup Example: p-block atom no
GeneralizedMolecularStructureClass A molecule grouping class that can be written using a chemical formula using ... no
FullySpecifiedAtom An atom type that has atomic number, charge, and neutron number stated (equiv... no
Glycan A molecule consisting of monosaccharide residues joined to one another by gly... no
PhysicochemicalEntity A discrete chemical structure, material structure, or subatomic particle type no
Zwitterion A molecule that has both a positive and negative charges but is net neutral no
AcidAnionGroupingClass A molecule grouping class that groups the different ion forms of the base of ... yes
ReactionGroupingClass A grouping class for reactions, for example, dehalogenase; breaking of covale... no
MoleculeGroupingClass A grouping class that classifies molecules no
MolecularAnion A polyatomic ion that is negative no
Macromolecule A large molecule, such as a polymer, lipid, or macrocycle no
GroupingBySmarts A grouping meta-pattern whose members are the individuals of a genus class th... no
ChemicalEntity A discrete structure that is one or more atoms that can be described by a che... no
MoleculeGroupingClassDefinedByComponents A grouping class defined as an exhaustive list of components no
Allotrope A molecule consisting of atoms of the same element no
AtomGroupingByPeriodicTableBlock Example: group 13 atom no
GroupingClassForAcidsOrBases no
Homopolymer a polymer with a single type of repeating unit no
AtomIonicForm an atom type in which only charge state is specified, designated by the eleme... no
MonomolecularPolymer A macromolecule composed of repeating subunits no
Monosaccharide A polyhydroxy aldehyde or ketone, or a compound derived from one, that cannot... no
ChemicalGroupingClass Instances of this class represent generic chemical concepts that can be used ... no
MonosaccharideResidue A monosaccharide as it occurs within a glycan, that is, the part of the glyca... no
SmallMolecule A molecule characterized by availability in small-molecule databases no
Reaction Reaction no
PhysicochemicalEntityGroupingClass no
SequenceInterval a chain of connected monomers in a linear polymer - for example, a sub-region... no
AminoAcidSequenceInterval no
MolecularComponent A proper part of a molecule that is larger than an atom no
PolyatomicEntity Any chemical entity consisting of more than one atom no
Monomer no
Protein A macromolecule composed of one or more polypeptide chains of amino acids tha... no
NonSpeciesMolecule A molecule in which the units are not identical no
MoleculeGroupingClassDefinedByAdditionOfAGroup A grouping class defined in terms of a derivative of a molecule and the addit... no
Mineral no
UnchargedAtom An atom type that has no charge no
Enantiomer one of two stereoisomers of a chiral molecule that are mirror images no
ChemicalSaltGroupingClass A grouping class for a chemical salt yes
GroupingByGenusAndPropertyValue A grouping meta-pattern defined as the members of a genus class whose value f... no
Material A substance composed of repeated chemical units that has a specific arrangeme... no
ChemicalGroupingByCharge A grouping class that refines a charge-neutral entity no
GroupingClass Instances of this class represent generic concepts that can be used to group... no
AtomCation A monoatomic ion that is positive, e no
IsomeraseReaction A reaction that converts a molecule from one isomer to another no
AtomGroupingByPeriodicTablePlacement no
PolyatomicIon A molecule that has a net charge no
NeutralMolecule A molecule that has no net charge and is not a zwitterion no
Isobar Isobars are atoms (nuclides) of different chemical elements that have the sam... no
MolecularDerivativeGroupingClass A grouping class defined as a derivative of another molecule or molecular gro... yes
ChemicalSaltByCation A grouping class for a chemical salt named by cation yes
ChemicalMixture A polyatomic entity that consists of two or more parts that are weakly bound,... no
SupramolecularPolymer polymeric arrays of monomeric units that are connected by reversible and high... no
ImpreciseChemicalMixture A macroscopic polyatomic entity that consists of multiple chemical entities w... no
RNASequenceInterval no
AtomOccurrence An occurrence of an atom in the context of a particular molecule no
MonomericPolymericGroupingClass no
Atom A chemical entity consisting of exactly one atomic nucleus and the electron(s... no
Isotope A specific subtype of an atom with a specified neutron number no
Ester An ester is a chemical compound derived from an acid (organic or inorganic) i... no
NucleotideSequenceInterval no
GeneralAcidBaseGroupingClass A molecule grouping class that can groups an acid together with all its conju... no
Peptide no
Stereoisomer no
ChemicalSaltByAnion A grouping class for a chemical salt named by anion yes
ChemicalElement generic form of an atom, with unspecified neutron or charge no
PreciseChemicalMixture A polyatomic entity that consists of two or more parts that are weakly bound,... no
GroupingByGenusAndRangeRestriction A grouping meta-pattern defined as the members of a genus class whose value f... no
MonoatomicIon An atom type that has a charge no
MoleculeByChargeState A molecule that has a charge state specified no
RacemicMixture a chemical compound that has equal amounts of left- and right-handed enantiom... no
ChemicalGroup no
Molecule A chemical entity that consists of two or more atoms where all atoms are conn... no
MolecularSubsequence no
FunctionalGroup no

Properties

Identifier and Mapping Information

Annotations

property value
owl AnnotationAssertion

Schema Source

  • from schema: https://w3id.org/chemrof

Mappings

Mapping Type Mapped Value
self rdfs:label
native chemrof:name
close bo:symbol

LinkML Source

name: name
annotations:
  owl:
    tag: owl
    value: AnnotationAssertion
description: name of chemical entity. E.g. nickel, carbon-16
title: name
from_schema: https://w3id.org/chemrof
close_mappings:
- bo:symbol
rank: 1000
is_a: information_property
slot_uri: rdfs:label
alias: name
domain_of:
- DomainEntity
- GroupingClass
- Atom
- AtomOccurrence
range: string