Class: molecular derivative grouping class (MolecularDerivativeGroupingClass)

A grouping class defined as a derivative of another molecule or molecular grouping class

URI: chemrof:MolecularDerivativeGroupingClass

 classDiagram
    class MolecularDerivativeGroupingClass
      MoleculeGroupingClass <|-- MolecularDerivativeGroupingClass

      MolecularDerivativeGroupingClass : derivative_of

          MolecularDerivativeGroupingClass --> ChemicalEntity : derivative_of

      MolecularDerivativeGroupingClass : id

      MolecularDerivativeGroupingClass : name

      MolecularDerivativeGroupingClass : owl_subclass_of

          MolecularDerivativeGroupingClass --> OwlClass : owl_subclass_of

      MolecularDerivativeGroupingClass : subtype_of

          MolecularDerivativeGroupingClass --> MoleculeGroupingClass : subtype_of

Inheritance

• GroupingClass [ OwlClass]
  • PhysicochemicalEntityGroupingClass
    • ChemicalGroupingClass [ OwlClass]
      • MoleculeGroupingClass
        • MolecularDerivativeGroupingClass

Slots

Name	Cardinality and Range	Description	Inheritance
derivative_of	0..1 ChemicalEntity		direct
id	1..1 String		ChemicalGroupingClass, GroupingClass
owl_subclass_of	0..1 OwlClass	Holds between C and P if C owl:subClassOf P	OwlClass
name	0..1 String	name of chemical entity	GroupingClass
subtype_of	0..* MoleculeGroupingClass	grouping classes can be arranged in hierarchies arbitrarily deep	GroupingClass

Examples

Value
oxoacid derivative
D-ornithine derivative

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/chemrof

Mappings

Mapping Type	Mapped Value
self	chemrof:MolecularDerivativeGroupingClass
native	chemrof:MolecularDerivativeGroupingClass

LinkML Source

Direct

name: MolecularDerivativeGroupingClass
description: A grouping class defined as a derivative of another molecule or molecular
  grouping class
title: molecular derivative grouping class
examples:
- value: oxoacid derivative
- value: D-ornithine derivative
from_schema: https://w3id.org/chemrof
is_a: MoleculeGroupingClass
slots:
- derivative_of
slot_usage:
  name:
    name: name
    string_serialization: '{derivative_of.label} derivative'
    domain_of:
    - DomainEntity
    - GroupingClass
    - Atom
    - AtomOccurrence
  classifies:
    name: classifies
    range: Molecule
defining_slots:
- derivative_of

Induced

name: MolecularDerivativeGroupingClass
description: A grouping class defined as a derivative of another molecule or molecular
  grouping class
title: molecular derivative grouping class
examples:
- value: oxoacid derivative
- value: D-ornithine derivative
from_schema: https://w3id.org/chemrof
is_a: MoleculeGroupingClass
slot_usage:
  name:
    name: name
    string_serialization: '{derivative_of.label} derivative'
    domain_of:
    - DomainEntity
    - GroupingClass
    - Atom
    - AtomOccurrence
  classifies:
    name: classifies
    range: Molecule
attributes:
  derivative_of:
    name: derivative_of
    title: derivative of
    from_schema: https://w3id.org/chemrof
    rank: 1000
    is_a: alternate_form_of
    domain: ChemicalEntity
    alias: derivative_of
    owner: MolecularDerivativeGroupingClass
    domain_of:
    - MolecularDerivativeGroupingClass
    range: ChemicalEntity
  id:
    name: id
    title: id
    from_schema: https://w3id.org/chemrof
    mappings:
    - schema:identifier
    rank: 1000
    is_a: information_property
    identifier: true
    alias: id
    owner: MolecularDerivativeGroupingClass
    domain_of:
    - DomainEntity
    - GroupingClass
    - ChemicalGroupingClass
    range: string
    required: true
  owl_subclass_of:
    name: owl_subclass_of
    description: 'Holds between C and P if C owl:subClassOf P. Note that in this model,
      most classes are metaclasses (see ''owl class''), where these metaclasses may
      represent *groupings* or specific countable elements or species. We provide
      two different sub-properties of subclass of for two cases: (1) subtype_of, which
      connects grouping classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a
      amino-acid), (2) classified_by, which connects a specific element to a grouping
      class (e.g. methane is_a hydrocarbon; iron is_a metal; serine is_a amino-acid)'
    title: owl subclass of
    from_schema: https://w3id.org/chemrof
    aliases:
    - is a
    exact_mappings:
    - rdfs:subClassOf
    narrow_mappings:
    - bo:family
    rank: 1000
    is_a: classification_relationship
    mixin: true
    domain: OwlClass
    alias: owl_subclass_of
    owner: MolecularDerivativeGroupingClass
    domain_of:
    - OwlClass
    range: OwlClass
  name:
    name: name
    description: name of chemical entity. E.g. nickel, carbon-16
    title: name
    from_schema: https://w3id.org/chemrof
    rank: 1000
    is_a: information_property
    string_serialization: '{derivative_of.label} derivative'
    slot_uri: rdfs:label
    alias: name
    owner: MolecularDerivativeGroupingClass
    domain_of:
    - DomainEntity
    - GroupingClass
    - Atom
    - AtomOccurrence
    range: string
  subtype_of:
    name: subtype_of
    description: grouping classes can be arranged in hierarchies arbitrarily deep.
      Note that subtype_of should only connect two grouping classes
    title: subtype of
    from_schema: https://w3id.org/chemrof
    rank: 1000
    is_a: chemical_to_chemical_relationship
    domain: OwlClass
    multivalued: true
    alias: subtype_of
    owner: MolecularDerivativeGroupingClass
    domain_of:
    - GroupingClass
    range: MoleculeGroupingClass
    required: false
defining_slots:
- derivative_of