Slot: owl subclass of (owl_subclass_of)
Holds between C and P if C owl:subClassOf P. Note that in this model, most classes are metaclasses (see 'owl class'), where these metaclasses may represent groupings or specific countable elements or species. We provide two different sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by, which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon; iron is_a metal; serine is_a amino-acid)
URI: chemrof:owl_subclass_of Alias: owl_subclass_of
Inheritance
- classification_relationship
- owl_subclass_of
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Moiety | a named part of a molecule | no |
| MaterialGroupingClass | A grouping class that classifies materials | no |
| AcidBaseConflationClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| NaturalProduct | no | |
| ChemicalSalt | a chemical compound consisting of an ionic assembly of cations and anions | no |
| Nuclide | an atomic species characterized by the specific constitution of its nucleus | no |
| DNASequenceInterval | no | |
| Copolymer | a polymer with a more than one type of repeating unit | no |
| MolecularComplex | A molecular complex is a chemical complex composed of at least one weakly int... | no |
| Radionuclide | an atom that has excess nuclear energy, making it unstable | no |
| AtomGroupingClass | A grouping class that classifies atoms | no |
| AtomAnion | A monoatomic ion that is negative | no |
| PolymerPart | no | |
| AtomGroupingByProperty | Example: metal atom | no |
| MolecularSpecies | A molecule in which the units are identical | no |
| ChemicalSimilarity | A relationship between two or more chemical entities where there is some degr... | no |
| MolecularComponentGroupingClass | A grouping class that classifies molecular components | no |
| PartiallySpecifiedAtom | An atom type that only has a subset of properties (has atomic number, charge,... | no |
| NutrientRole | Role of providing nutritional value, such as vitamins or minerals | no |
| MolecularCation | A polyatomic ion that is positive | no |
| ProportionalPart | A part of a complex mixture that is of uniform composition | no |
| NetUnchargedMolecule | A molecule that has no net charge | no |
| AtomGroupingByPeriodicTableGroup | Example: p-block atom | no |
| GeneralizedMolecularStructureClass | A molecule grouping class that can be written using a chemical formula using ... | no |
| FullySpecifiedAtom | An atom type that has atomic number, charge, and neutron number stated (equiv... | no |
| Glycan | A molecule consisting of monosaccharide residues joined to one another by gly... | no |
| Zwitterion | A molecule that has both a positive and negative charges but is net neutral | no |
| AcidAnionGroupingClass | A molecule grouping class that groups the different ion forms of the base of ... | no |
| ReactionGroupingClass | A grouping class for reactions, for example, dehalogenase; breaking of covale... | no |
| MoleculeGroupingClass | A grouping class that classifies molecules | no |
| MolecularAnion | A polyatomic ion that is negative | no |
| Macromolecule | A large molecule, such as a polymer, lipid, or macrocycle | no |
| GroupingBySmarts | A grouping meta-pattern whose members are the individuals of a genus class th... | no |
| ChemicalEntity | A discrete structure that is one or more atoms that can be described by a che... | no |
| SolventRole | Role of dissolving other components in a mixture | no |
| MoleculeGroupingClassDefinedByComponents | A grouping class defined as an exhaustive list of components | no |
| Allotrope | A molecule consisting of atoms of the same element | no |
| IngredientRole | A role that a chemical entity plays as an ingredient in a mixture, such as ca... | no |
| AtomGroupingByPeriodicTableBlock | Example: group 13 atom | no |
| GroupingClassForAcidsOrBases | no | |
| EnzymeRegulation | A reified relationship in which a chemical effector modulates the activity of... | no |
| MineralNutrientRole | Role of providing a mineral nutrient, often as a trace element | no |
| PolymerRepeatUnit | An abstract part of a polymer that is all instances of a repeated monomer of ... | no |
| Homopolymer | a polymer with a single type of repeating unit | no |
| AtomIonicForm | an atom type in which only charge state is specified, designated by the eleme... | no |
| MonomolecularPolymer | A macromolecule composed of repeating subunits | no |
| Monosaccharide | A polyhydroxy aldehyde or ketone, or a compound derived from one, that cannot... | no |
| SubatomicParticleOccurrence | no | |
| AllostericRegulation | Allosteric activation or inhibition of an enzyme by an effector that binds at... | no |
| ChemicalGroupingClass | Instances of this class represent generic chemical concepts that can be used ... | no |
| MonosaccharideResidue | A monosaccharide as it occurs within a glycan, that is, the part of the glyca... | no |
| SmallMolecule | A molecule characterized by availability in small-molecule databases | no |
| ChemicalRole | A characteristic of a chemical entity that is realized under particular condi... | no |
| PhysicochemicalEntityGroupingClass | no | |
| CompetitiveInhibition | Inhibition in which the effector (inhibitor) competes with the substrate for ... | no |
| SequenceInterval | a chain of connected monomers in a linear polymer - for example, a sub-region... | no |
| AminoAcidSequenceInterval | no | |
| MolecularComponent | A proper part of a molecule that is larger than an atom | no |
| PolyatomicEntity | Any chemical entity consisting of more than one atom | no |
| Monomer | no | |
| Protein | A macromolecule composed of one or more polypeptide chains of amino acids tha... | no |
| NonSpeciesMolecule | A molecule in which the units are not identical | no |
| MoleculeGroupingClassDefinedByAdditionOfAGroup | A grouping class defined in terms of a derivative of a molecule and the addit... | no |
| BufferRole | Role of maintaining pH in a solution or mixture | no |
| UnchargedAtom | An atom type that has no charge | no |
| Enantiomer | one of two stereoisomers of a chiral molecule that are mirror images | no |
| ChemicalSaltGroupingClass | A grouping class for a chemical salt | no |
| GroupingByGenusAndPropertyValue | A grouping meta-pattern defined as the members of a genus class whose value f... | no |
| ChemicalGroupingByCharge | A grouping class that refines a charge-neutral entity | no |
| ElementSourceRole | Role of providing a specific element to a biological or chemical system | no |
| GroupingClass | Instances of this class represent generic concepts that can be used to group... | no |
| AtomCation | A monoatomic ion that is positive, e | no |
| ReactionParticipant | Instances of this link a reaction to a chemical entity participant | no |
| AtomGroupingByPeriodicTablePlacement | no | |
| PolyatomicIon | A molecule that has a net charge | no |
| NeutralMolecule | A molecule that has no net charge and is not a zwitterion | no |
| Isobar | Isobars are atoms (nuclides) of different chemical elements that have the sam... | no |
| ChemicalRelationship | A reified relationship | no |
| MolecularDerivativeGroupingClass | A grouping class defined as a derivative of another molecule or molecular gro... | no |
| AtomicBond | A connection between two atoms | no |
| ChemicalSaltByCation | A grouping class for a chemical salt named by cation | no |
| ChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| SupramolecularPolymer | polymeric arrays of monomeric units that are connected by reversible and high... | no |
| MoleculePairwiseSimilarity | no | |
| ImpreciseChemicalMixture | A macroscopic polyatomic entity that consists of multiple chemical entities w... | no |
| RNASequenceInterval | no | |
| AtomOccurrence | An occurrence of an atom in the context of a particular molecule | no |
| OwlClass | instances of this class mixin are OWL Classes | no |
| GlycosidicLinkage | A reified covalent linkage between the anomeric carbon of one monosaccharide ... | no |
| MonomericPolymericGroupingClass | no | |
| TanimotoSimilarity | no | |
| Atom | A chemical entity consisting of exactly one atomic nucleus and the electron(s... | no |
| Isotope | A specific subtype of an atom with a specified neutron number | no |
| Ester | An ester is a chemical compound derived from an acid (organic or inorganic) i... | no |
| NucleotideSequenceInterval | no | |
| GeneralAcidBaseGroupingClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| ThermodynamicEstimate | A reified thermodynamic quantity for a reaction, bundled with the aqueous con... | no |
| Peptide | no | |
| Stereoisomer | no | |
| ChemicalSaltByAnion | A grouping class for a chemical salt named by anion | no |
| ChemicalElement | generic form of an atom, with unspecified neutron or charge | no |
| PreciseChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| GroupingByGenusAndRangeRestriction | A grouping meta-pattern defined as the members of a genus class whose value f... | no |
| MonoatomicIon | An atom type that has a charge | no |
| MoleculeByChargeState | A molecule that has a charge state specified | no |
| RacemicMixture | a chemical compound that has equal amounts of left- and right-handed enantiom... | no |
| VitaminRole | Role of providing a vitamin component | no |
| ChemicalGroup | no | |
| Molecule | A chemical entity that consists of two or more atoms where all atoms are conn... | no |
| MolecularSubsequence | no | |
| FunctionalGroup | no |
Mixin Usage
| mixed into | description | range | domain |
|---|---|---|---|
| subtype_of | A subtype_of relationship holds between C and P if C is a more specialized fo... | OwlClass | GroupingClass |
| classified_by | A subtype_of relationship holds between I and C if I is a specific entity of ... | OwlClass | ChemicalEntity |
Properties
-
Range: OwlClass
-
Mixin: True
Aliases
- is a
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| owl | SubClassOf |
Schema Source
- from schema: https://w3id.org/chemrof
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | chemrof:owl_subclass_of |
| native | chemrof:owl_subclass_of |
| exact | rdfs:subClassOf |
| narrow | bo:family |
LinkML Source
name: owl_subclass_of
annotations:
owl:
tag: owl
value: SubClassOf
description: 'Holds between C and P if C owl:subClassOf P. Note that in this model,
most classes are metaclasses (see ''owl class''), where these metaclasses may represent
*groupings* or specific countable elements or species. We provide two different
sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping
classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by,
which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon;
iron is_a metal; serine is_a amino-acid)'
title: owl subclass of
from_schema: https://w3id.org/chemrof
aliases:
- is a
exact_mappings:
- rdfs:subClassOf
narrow_mappings:
- bo:family
rank: 1000
is_a: classification_relationship
mixin: true
domain: OwlClass
alias: owl_subclass_of
domain_of:
- OwlClass
range: OwlClass