Slot: owl subclass of (owl_subclass_of)
Holds between C and P if C owl:subClassOf P. Note that in this model, most classes are metaclasses (see 'owl class'), where these metaclasses may represent groupings or specific countable elements or species. We provide two different sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by, which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon; iron is_a metal; serine is_a amino-acid)
URI: chemrof:owl_subclass_of Alias: owl_subclass_of
Inheritance
- classification_relationship
- owl_subclass_of
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| MolecularCation | A polyatomic ion that is positive | no |
| PartiallySpecifiedAtom | An atom type that only has a subset of properties (has atomic number, charge,... | no |
| Moiety | a named part of a molecule | no |
| NaturalProduct | no | |
| ChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| ChemicalRole | A characteristic of a chemical entity that is realized under particular condi... | no |
| ChemicalElement | generic form of an atom, with unspecified neutron or charge | no |
| RNASequenceInterval | no | |
| PolymerPart | no | |
| VitaminRole | Role of providing a vitamin component | no |
| AtomGroupingByPeriodicTableGroup | Example: p-block atom | no |
| Atom | A chemical entity consisting of exactly one atomic nucleus and the electron(s... | no |
| ChemicalSimilarity | A relationship between two or more chemical entities where there is some degr... | no |
| AtomAnion | A monoatomic ion that is negative | no |
| FullySpecifiedAtom | An atom type that has atomic number, charge, and neutron number stated (equiv... | no |
| MolecularComponent | A proper part of a molecule that is larger than an atom | no |
| GroupingByGenusAndPropertyValue | A grouping meta-pattern defined as the members of a genus class whose value f... | no |
| NonSpeciesMolecule | A molecule in which the units are not identical | no |
| MolecularComponentGroupingClass | A grouping class that classifies molecular components | no |
| ChemicalEntity | A discrete structure that is one or more atoms that can be described by a che... | no |
| SmallMolecule | A molecule characterized by availability in small-molecule databases | no |
| Monomer | no | |
| ChemicalSaltGroupingClass | A grouping class for a chemical salt | no |
| Homopolymer | a polymer with a single type of repeating unit | no |
| MoleculeGroupingClassDefinedByAdditionOfAGroup | A grouping class defined in terms of a derivative of a molecule and the addit... | no |
| PolyatomicIon | A molecule that has a net charge | no |
| EnzymeRegulation | A reified relationship in which a chemical effector modulates the activity of... | no |
| MonoatomicIon | An atom type that has a charge | no |
| AtomGroupingByProperty | Example: metal atom | no |
| SubatomicParticleOccurrence | no | |
| ReactionParticipant | Instances of this link a reaction to a chemical entity participant | no |
| MolecularAnion | A polyatomic ion that is negative | no |
| AtomGroupingByPeriodicTableBlock | Example: group 13 atom | no |
| MoleculeByChargeState | A molecule that has a charge state specified | no |
| GroupingBySmarts | A grouping meta-pattern whose members are the individuals of a genus class th... | no |
| ReactionGroupingClass | A grouping class for reactions, for example, dehalogenase; breaking of covale... | no |
| AtomIonicForm | an atom type in which only charge state is specified, designated by the eleme... | no |
| GeneralAcidBaseGroupingClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| MoleculeGroupingClassDefinedByComponents | A grouping class defined as an exhaustive list of components | no |
| ElementSourceRole | Role of providing a specific element to a biological or chemical system | no |
| Radionuclide | an atom that has excess nuclear energy, making it unstable | no |
| Stereoisomer | no | |
| ProportionalPart | A part of a complex mixture that is of uniform composition | no |
| NucleotideSequenceInterval | no | |
| SequenceInterval | a chain of connected monomers in a linear polymer - for example, a sub-region... | no |
| NeutralMolecule | A molecule that has no net charge and is not a zwitterion | no |
| AtomCation | A monoatomic ion that is positive, e | no |
| GeneralizedMolecularStructureClass | A molecule grouping class that can be written using a chemical formula using ... | no |
| Isobar | Isobars are atoms (nuclides) of different chemical elements that have the sam... | no |
| Zwitterion | A molecule that has both a positive and negative charges but is net neutral | no |
| PolymerRepeatUnit | An abstract part of a polymer that is all instances of a repeated monomer of ... | no |
| SupramolecularPolymer | polymeric arrays of monomeric units that are connected by reversible and high... | no |
| MoleculeGroupingClass | A grouping class that classifies molecules | no |
| PolyatomicEntity | Any chemical entity consisting of more than one atom | no |
| ChemicalRelationship | A reified relationship | no |
| NutrientRole | Role of providing nutritional value, such as vitamins or minerals | no |
| Peptide | no | |
| Macromolecule | A large molecule, such as a polymer, lipid, or macrocycle | no |
| ChemicalGroupingClass | Instances of this class represent generic chemical concepts that can be used ... | no |
| FunctionalGroup | no | |
| BufferRole | Role of maintaining pH in a solution or mixture | no |
| Enantiomer | one of two stereoisomers of a chiral molecule that are mirror images | no |
| CompetitiveInhibition | Inhibition in which the effector (inhibitor) competes with the substrate for ... | no |
| MonosaccharideResidue | A monosaccharide as it occurs within a glycan, that is, the part of the glyca... | no |
| MolecularDerivativeGroupingClass | A grouping class defined as a derivative of another molecule or molecular gro... | no |
| Copolymer | a polymer with a more than one type of repeating unit | no |
| Protein | A macromolecule composed of one or more polypeptide chains of amino acids tha... | no |
| AcidBaseConflationClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| AtomicBond | A connection between two atoms | no |
| MolecularSubsequence | no | |
| ImpreciseChemicalMixture | A macroscopic polyatomic entity that consists of multiple chemical entities w... | no |
| MineralNutrientRole | Role of providing a mineral nutrient, often as a trace element | no |
| RacemicMixture | a chemical compound that has equal amounts of left- and right-handed enantiom... | no |
| SolventRole | Role of dissolving other components in a mixture | no |
| NetUnchargedMolecule | A molecule that has no net charge | no |
| AtomOccurrence | An occurrence of an atom in the context of a particular molecule | no |
| Allotrope | A molecule consisting of atoms of the same element | no |
| GlycosidicLinkage | A reified covalent linkage between the anomeric carbon of one monosaccharide ... | no |
| ChemicalGroupingByCharge | A grouping class that refines a charge-neutral entity | no |
| GroupingByGenusAndRangeRestriction | A grouping meta-pattern defined as the members of a genus class whose value f... | no |
| ChemicalSaltByAnion | A grouping class for a chemical salt named by anion | no |
| OwlClass | instances of this class mixin are OWL Classes | no |
| Ester | An ester is a chemical compound derived from an acid (organic or inorganic) i... | no |
| ChemicalGroup | no | |
| UnchargedAtom | An atom type that has no charge | no |
| AcidAnionGroupingClass | A molecule grouping class that groups the different ion forms of the base of ... | no |
| AtomGroupingByPeriodicTablePlacement | no | |
| TanimotoSimilarity | no | |
| ChemicalSaltByCation | A grouping class for a chemical salt named by cation | no |
| DNASequenceInterval | no | |
| ChemicalSalt | a chemical compound consisting of an ionic assembly of cations and anions | no |
| MoleculePairwiseSimilarity | no | |
| GroupingClassForAcidsOrBases | no | |
| AtomGroupingClass | A grouping class that classifies atoms | no |
| Isotope | A specific subtype of an atom with a specified neutron number | no |
| MonomolecularPolymer | A macromolecule composed of repeating subunits | no |
| Nuclide | an atomic species characterized by the specific constitution of its nucleus | no |
| MolecularComplex | A molecular complex is a chemical complex composed of at least one weakly int... | no |
| AllostericRegulation | Allosteric activation or inhibition of an enzyme by an effector that binds at... | no |
| Glycan | A molecule consisting of monosaccharide residues joined to one another by gly... | no |
| PreciseChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| IngredientRole | A role that a chemical entity plays as an ingredient in a mixture, such as ca... | no |
| MonomericPolymericGroupingClass | no | |
| GroupingClass | Instances of this class represent generic concepts that can be used to group... | no |
| PhysicochemicalEntityGroupingClass | no | |
| ThermodynamicEstimate | A reified thermodynamic quantity for a reaction, bundled with the aqueous con... | no |
| Molecule | A chemical entity that consists of two or more atoms where all atoms are conn... | no |
| AminoAcidSequenceInterval | no | |
| MaterialGroupingClass | A grouping class that classifies materials | no |
| MolecularSpecies | A molecule in which the units are identical | no |
| Monosaccharide | A polyhydroxy aldehyde or ketone, or a compound derived from one, that cannot... | no |
Mixin Usage
| mixed into | description | range | domain |
|---|---|---|---|
| subtype_of | A subtype_of relationship holds between C and P if C is a more specialized fo... | OwlClass | GroupingClass |
| classified_by | A subtype_of relationship holds between I and C if I is a specific entity of ... | OwlClass | ChemicalEntity |
Properties
-
Range: OwlClass
-
Mixin: True
Aliases
- is a
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| owl | SubClassOf |
Schema Source
- from schema: https://w3id.org/chemrof
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | chemrof:owl_subclass_of |
| native | chemrof:owl_subclass_of |
| exact | rdfs:subClassOf |
| narrow | bo:family |
LinkML Source
name: owl_subclass_of
annotations:
owl:
tag: owl
value: SubClassOf
description: 'Holds between C and P if C owl:subClassOf P. Note that in this model,
most classes are metaclasses (see ''owl class''), where these metaclasses may represent
*groupings* or specific countable elements or species. We provide two different
sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping
classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by,
which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon;
iron is_a metal; serine is_a amino-acid)'
title: owl subclass of
from_schema: https://w3id.org/chemrof
aliases:
- is a
exact_mappings:
- rdfs:subClassOf
narrow_mappings:
- bo:family
rank: 1000
is_a: classification_relationship
mixin: true
domain: OwlClass
alias: owl_subclass_of
domain_of:
- OwlClass
range: OwlClass