Slot: owl subclass of (owl_subclass_of)
Holds between C and P if C owl:subClassOf P. Note that in this model, most classes are metaclasses (see 'owl class'), where these metaclasses may represent groupings or specific countable elements or species. We provide two different sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by, which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon; iron is_a metal; serine is_a amino-acid)
Inheritance
- classification_relationship
- owl_subclass_of
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Glycan | A macromolecule consisting of a large number of monosaccharides linked glycos... | no |
| AtomGroupingByProperty | Example: metal atom | no |
| RNASequenceInterval | no | |
| UnchargedAtom | An atom type that has no charge | no |
| ChemicalElement | generic form of an atom, with unspecified neutron or charge | no |
| OwlClass | instances of this class mixin are OWL Classes | no |
| Isobar | Isobars are atoms (nuclides) of different chemical elements that have the sam... | no |
| RacemicMixture | a chemical compound that has equal amounts of left- and right-handed enantiom... | no |
| AtomGroupingByPeriodicTablePlacement | no | |
| PhysicochemicalEntityGroupingClass | no | |
| SmallMolecule | A molecule characterized by availability in small-molecule databases | no |
| MolecularAnion | A polyatomic ion that is negative | no |
| MolecularComponentGroupingClass | A grouping class that classifies molecular components | no |
| GroupingClassForAcidsOrBases | no | |
| Zwitterion | A molecule that has both a positive and negative charges but is net neutral | no |
| MolecularCation | A polyatomic ion that is positive | no |
| ChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| MoleculeByChargeState | A molecule that has a charge state specified | no |
| MoleculePairwiseSimilarity | no | |
| GeneralAcidBaseGroupingClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| PolyatomicEntity | Any chemical entity consisting of more than one atom | no |
| Atom | A chemical entity consisting of exactly one atomic nucleus and the electron(s... | no |
| MonoatomicIon | An atom type that has a charge | no |
| Protein | no | |
| Allotrope | A molecule consisting of atoms of the same element | no |
| AtomicBond | A connection between two atoms | no |
| DNASequenceInterval | no | |
| Macromolecule | A large molecule, such as a polymer, lipid, or macrocycle | no |
| MolecularComponent | A proper part of a molecule that is larger than an atom | no |
| FunctionalGroup | no | |
| Molecule | A chemical entity that consists of two or more atoms where all atoms are conn... | no |
| Ester | An ester is a chemical compound derived from an acid (organic or inorganic) i... | no |
| Stereoisomer | no | |
| MoleculeGroupingClassDefinedByComponents | A grouping class defined as an exhaustive list of components | no |
| NeutralMolecule | A molecule that has no net charge and is not a zwitterion | no |
| SupramolecularPolymer | polymeric arrays of monomeric units that are connected by reversible and high... | no |
| ChemicalSaltByCation | A grouping class for a chemical salt named by cation | no |
| GeneralizedMolecularStructureClass | A molecule grouping class that can be written using a chemical formula using ... | no |
| PolymerPart | no | |
| Enantiomer | one of two stereoisomers of a chiral molecule that are mirror images | no |
| GroupingClass | Instances of this class represent generic concepts that can be used to group... | no |
| MoleculeGroupingClassDefinedByAdditionOfAGroup | A grouping class defined in terms of a derivative of a molecule and the addit... | no |
| PartiallySpecifiedAtom | An atom type that only has a subset of properties (has atomic number, charge,... | no |
| SequenceInterval | a chain of connected monomers in a linear polymer - for example, a sub-region... | no |
| Peptide | no | |
| ProportionalPart | A part of a complex mixture that is of uniform composition | no |
| PolyatomicIon | A molecule that has a net charge | no |
| TanimotoSimilarity | no | |
| AtomCation | A monoatomic ion that is positive, e | no |
| MonomolecularPolymer | A macromolecule composed of repeating subunits | no |
| NetUnchargedMolecule | A molecule that has no net charge | no |
| Radionuclide | an atom that has excess nuclear energy, making it unstable | no |
| AtomAnion | A monoatomic ion that is negative | no |
| Nuclide | an atomic species characterized by the specific constitution of its nucleus | no |
| FullySpecifiedAtom | An atom type that has atomic number, charge, and neutron number stated (equiv... | no |
| AtomGroupingByPeriodicTableGroup | Example: p-block atom | no |
| MoleculeGroupingClass | A grouping class that classifies molecules | no |
| Isotope | A specific subtype of an atom with a specified neutron number | no |
| ChemicalSalt | a chemical compound consisting of an ionic assembly of cations and anions | no |
| MolecularDerivativeGroupingClass | A grouping class defined as a derivative of another molecule or molecular gro... | no |
| NaturalProduct | no | |
| AtomOccurrence | An occurrence of an atom in the context of a particular molecule | no |
| ChemicalGroup | no | |
| ChemicalSaltByAnion | A grouping class for a chemical salt named by anion | no |
| ChemicalSaltGroupingClass | A grouping class for a chemical salt | no |
| PreciseChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| AcidBaseConflationClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| ChemicalEntity | A discrete structure that is one or more atoms that can be described by a che... | no |
| MolecularSubsequence | no | |
| ChemicalGroupingClass | Instances of this class represent generic chemical concepts that can be used ... | no |
| Moiety | a named part of a molecule | no |
| Monomer | no | |
| AtomGroupingClass | A grouping class that classifies atoms | no |
| ReactionGroupingClass | A grouping class for reactions, for example, dehalogenase; breaking of covale... | no |
| ChemicalRelationship | A reified relationship | no |
| AcidAnionGroupingClass | A molecule grouping class that groups the different ion forms of the base of ... | no |
| MolecularComplex | A molecular complex is a chemical complex composed of at least one weakly int... | no |
| MonomericPolymericGroupingClass | no | |
| ChemicalRole | A characteristic of a chemical entity that is realized under particular condi... | no |
| NucleotideSequenceInterval | no | |
| Homopolymer | a polymer with a single type of repeating unit | no |
| ChemicalSimilarity | A relationship between two or more chemical entities where there is some degr... | no |
| SubatomicParticleOccurrence | no | |
| AminoAcidSequenceInterval | no | |
| MolecularSpecies | A molecule in which the units are identical | no |
| PolymerRepeatUnit | An abstract part of a polymer that is all instances of a repeated monomer of ... | no |
| ReactionParticipant | Instances of this link a reaction to a chemical entity participant | no |
| AtomGroupingByPeriodicTableBlock | Example: group 13 atom | no |
| NonSpeciesMolecule | A molecule in which the units are not identical | no |
| MaterialGroupingClass | A grouping class that classifies materials | no |
| ChemicalGroupingByCharge | A grouping class that refines a charge-neutral entity | no |
| AtomIonicForm | an atom type in which only charge state is specified, designated by the eleme... | no |
| ImpreciseChemicalMixture | A macroscopic polyatomic entity that consists of multiple chemical entities w... | no |
| Copolymer | a polymer with a more than one type of repeating unit | no |
Mixin Usage
| mixed into | description | range | domain |
|---|---|---|---|
| subtype_of | A subtype_of relationship holds between C and P if C is a more specialized fo... | OwlClass | GroupingClass |
| classified_by | A subtype_of relationship holds between I and C if I is a specific entity of ... | OwlClass |
Properties
-
Range: OwlClass
-
Mixin: True
Aliases
- is a
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/chemrof
LinkML Source
name: owl_subclass_of
description: 'Holds between C and P if C owl:subClassOf P. Note that in this model,
most classes are metaclasses (see ''owl class''), where these metaclasses may represent
*groupings* or specific countable elements or species. We provide two different
sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping
classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by,
which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon;
iron is_a metal; serine is_a amino-acid)'
title: owl subclass of
from_schema: https://w3id.org/chemrof
aliases:
- is a
exact_mappings:
- rdfs:subClassOf
narrow_mappings:
- bo:family
rank: 1000
is_a: classification_relationship
mixin: true
domain: OwlClass
alias: owl_subclass_of
domain_of:
- OwlClass
range: OwlClass