Slot: owl subclass of (owl_subclass_of)
Holds between C and P if C owl:subClassOf P. Note that in this model, most classes are metaclasses (see 'owl class'), where these metaclasses may represent groupings or specific countable elements or species. We provide two different sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by, which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon; iron is_a metal; serine is_a amino-acid)
URI: chemrof:owl_subclass_of Alias: owl_subclass_of
Inheritance
- classification_relationship
- owl_subclass_of
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| ChemicalEntity | A discrete structure that is one or more atoms that can be described by a che... | no |
| ProportionalPart | A part of a complex mixture that is of uniform composition | no |
| AtomGroupingByPeriodicTablePlacement | no | |
| FullySpecifiedAtom | An atom type that has atomic number, charge, and neutron number stated (equiv... | no |
| MoleculeGroupingClassDefinedByAdditionOfAGroup | A grouping class defined in terms of a derivative of a molecule and the addit... | no |
| OwlClass | instances of this class mixin are OWL Classes | no |
| ChemicalElement | generic form of an atom, with unspecified neutron or charge | no |
| DNASequenceInterval | no | |
| ChemicalSimilarity | A relationship between two or more chemical entities where there is some degr... | no |
| MoleculePairwiseSimilarity | no | |
| ReactionGroupingClass | A grouping class for reactions, for example, dehalogenase; breaking of covale... | no |
| CompetitiveInhibition | Inhibition in which the effector (inhibitor) competes with the substrate for ... | no |
| Copolymer | a polymer with a more than one type of repeating unit | no |
| ChemicalRelationship | A reified relationship | no |
| PolyatomicIon | A molecule that has a net charge | no |
| GroupingClass | Instances of this class represent generic concepts that can be used to group... | no |
| ChemicalRole | A characteristic of a chemical entity that is realized under particular condi... | no |
| GroupingClassForAcidsOrBases | no | |
| VitaminRole | Role of providing a vitamin component | no |
| ChemicalGroupingClass | Instances of this class represent generic chemical concepts that can be used ... | no |
| MolecularCation | A polyatomic ion that is positive | no |
| RacemicMixture | a chemical compound that has equal amounts of left- and right-handed enantiom... | no |
| TanimotoSimilarity | no | |
| ElementSourceRole | Role of providing a specific element to a biological or chemical system | no |
| MonomericPolymericGroupingClass | no | |
| ReactionParticipant | Instances of this link a reaction to a chemical entity participant | no |
| MolecularSubsequence | no | |
| BufferRole | Role of maintaining pH in a solution or mixture | no |
| ChemicalSaltGroupingClass | A grouping class for a chemical salt | no |
| Ester | An ester is a chemical compound derived from an acid (organic or inorganic) i... | no |
| AcidAnionGroupingClass | A molecule grouping class that groups the different ion forms of the base of ... | no |
| Stereoisomer | no | |
| NetUnchargedMolecule | A molecule that has no net charge | no |
| Zwitterion | A molecule that has both a positive and negative charges but is net neutral | no |
| MolecularComponent | A proper part of a molecule that is larger than an atom | no |
| PolyatomicEntity | Any chemical entity consisting of more than one atom | no |
| SupramolecularPolymer | polymeric arrays of monomeric units that are connected by reversible and high... | no |
| AtomAnion | A monoatomic ion that is negative | no |
| PolymerPart | no | |
| ChemicalSaltByCation | A grouping class for a chemical salt named by cation | no |
| NeutralMolecule | A molecule that has no net charge and is not a zwitterion | no |
| Enantiomer | one of two stereoisomers of a chiral molecule that are mirror images | no |
| UnchargedAtom | An atom type that has no charge | no |
| MoleculeByChargeState | A molecule that has a charge state specified | no |
| PolymerRepeatUnit | An abstract part of a polymer that is all instances of a repeated monomer of ... | no |
| MineralNutrientRole | Role of providing a mineral nutrient, often as a trace element | no |
| Allotrope | A molecule consisting of atoms of the same element | no |
| ChemicalGroup | no | |
| Moiety | a named part of a molecule | no |
| AtomGroupingByPeriodicTableGroup | Example: p-block atom | no |
| MolecularDerivativeGroupingClass | A grouping class defined as a derivative of another molecule or molecular gro... | no |
| AtomGroupingByPeriodicTableBlock | Example: group 13 atom | no |
| ChemicalSalt | a chemical compound consisting of an ionic assembly of cations and anions | no |
| MonoatomicIon | An atom type that has a charge | no |
| PhysicochemicalEntityGroupingClass | no | |
| Nuclide | an atomic species characterized by the specific constitution of its nucleus | no |
| MolecularComplex | A molecular complex is a chemical complex composed of at least one weakly int... | no |
| SequenceInterval | a chain of connected monomers in a linear polymer - for example, a sub-region... | no |
| Isobar | Isobars are atoms (nuclides) of different chemical elements that have the sam... | no |
| ChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| ImpreciseChemicalMixture | A macroscopic polyatomic entity that consists of multiple chemical entities w... | no |
| Radionuclide | an atom that has excess nuclear energy, making it unstable | no |
| NucleotideSequenceInterval | no | |
| MolecularAnion | A polyatomic ion that is negative | no |
| Glycan | A macromolecule consisting of a large number of monosaccharides linked glycos... | no |
| Monomer | no | |
| MaterialGroupingClass | A grouping class that classifies materials | no |
| PreciseChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| MonomolecularPolymer | A macromolecule composed of repeating subunits | no |
| FunctionalGroup | no | |
| AminoAcidSequenceInterval | no | |
| AtomOccurrence | An occurrence of an atom in the context of a particular molecule | no |
| SmallMolecule | A molecule characterized by availability in small-molecule databases | no |
| MolecularComponentGroupingClass | A grouping class that classifies molecular components | no |
| Macromolecule | A large molecule, such as a polymer, lipid, or macrocycle | no |
| Molecule | A chemical entity that consists of two or more atoms where all atoms are conn... | no |
| NaturalProduct | no | |
| ChemicalSaltByAnion | A grouping class for a chemical salt named by anion | no |
| Atom | A chemical entity consisting of exactly one atomic nucleus and the electron(s... | no |
| Protein | A macromolecule composed of one or more polypeptide chains of amino acids tha... | no |
| AcidBaseConflationClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| MoleculeGroupingClassDefinedByComponents | A grouping class defined as an exhaustive list of components | no |
| ChemicalGroupingByCharge | A grouping class that refines a charge-neutral entity | no |
| SubatomicParticleOccurrence | no | |
| PartiallySpecifiedAtom | An atom type that only has a subset of properties (has atomic number, charge,... | no |
| AtomCation | A monoatomic ion that is positive, e | no |
| GeneralizedMolecularStructureClass | A molecule grouping class that can be written using a chemical formula using ... | no |
| AtomGroupingByProperty | Example: metal atom | no |
| MolecularSpecies | A molecule in which the units are identical | no |
| EnzymeRegulation | A reified relationship in which a chemical effector modulates the activity of... | no |
| IngredientRole | A role that a chemical entity plays as an ingredient in a mixture, such as ca... | no |
| Homopolymer | a polymer with a single type of repeating unit | no |
| NutrientRole | Role of providing nutritional value, such as vitamins or minerals | no |
| AtomicBond | A connection between two atoms | no |
| RNASequenceInterval | no | |
| Peptide | no | |
| MoleculeGroupingClass | A grouping class that classifies molecules | no |
| AllostericRegulation | Allosteric activation or inhibition of an enzyme by an effector that binds at... | no |
| NonSpeciesMolecule | A molecule in which the units are not identical | no |
| GeneralAcidBaseGroupingClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| SolventRole | Role of dissolving other components in a mixture | no |
| AtomGroupingClass | A grouping class that classifies atoms | no |
| AtomIonicForm | an atom type in which only charge state is specified, designated by the eleme... | no |
| Isotope | A specific subtype of an atom with a specified neutron number | no |
Mixin Usage
| mixed into | description | range | domain |
|---|---|---|---|
| subtype_of | A subtype_of relationship holds between C and P if C is a more specialized fo... | OwlClass | GroupingClass |
| classified_by | A subtype_of relationship holds between I and C if I is a specific entity of ... | OwlClass | ChemicalEntity |
Properties
-
Range: OwlClass
-
Mixin: True
Aliases
- is a
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| owl | SubClassOf |
Schema Source
- from schema: https://w3id.org/chemrof
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | chemrof:owl_subclass_of |
| native | chemrof:owl_subclass_of |
| exact | rdfs:subClassOf |
| narrow | bo:family |
LinkML Source
name: owl_subclass_of
annotations:
owl:
tag: owl
value: SubClassOf
description: 'Holds between C and P if C owl:subClassOf P. Note that in this model,
most classes are metaclasses (see ''owl class''), where these metaclasses may represent
*groupings* or specific countable elements or species. We provide two different
sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping
classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by,
which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon;
iron is_a metal; serine is_a amino-acid)'
title: owl subclass of
from_schema: https://w3id.org/chemrof
aliases:
- is a
exact_mappings:
- rdfs:subClassOf
narrow_mappings:
- bo:family
rank: 1000
is_a: classification_relationship
mixin: true
domain: OwlClass
alias: owl_subclass_of
domain_of:
- OwlClass
range: OwlClass