Slot: owl subclass of (owl_subclass_of)
Holds between C and P if C owl:subClassOf P. Note that in this model, most classes are metaclasses (see 'owl class'), where these metaclasses may represent groupings or specific countable elements or species. We provide two different sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by, which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon; iron is_a metal; serine is_a amino-acid)
URI: chemrof:owl_subclass_of Alias: owl_subclass_of
Inheritance
- classification_relationship
- owl_subclass_of
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| MoleculeGroupingClass | A grouping class that classifies molecules | no |
| PolyatomicEntity | Any chemical entity consisting of more than one atom | no |
| AminoAcidSequenceInterval | no | |
| ChemicalSalt | a chemical compound consisting of an ionic assembly of cations and anions | no |
| PolymerRepeatUnit | An abstract part of a polymer that is all instances of a repeated monomer of ... | no |
| ElementSourceRole | Role of providing a specific element to a biological or chemical system | no |
| Copolymer | a polymer with a more than one type of repeating unit | no |
| MolecularComplex | A molecular complex is a chemical complex composed of at least one weakly int... | no |
| Glycan | A macromolecule consisting of a large number of monosaccharides linked glycos... | no |
| MolecularComponent | A proper part of a molecule that is larger than an atom | no |
| NaturalProduct | no | |
| MoleculeByChargeState | A molecule that has a charge state specified | no |
| BufferRole | Role of maintaining pH in a solution or mixture | no |
| Stereoisomer | no | |
| GroupingClass | Instances of this class represent generic concepts that can be used to group... | no |
| Isotope | A specific subtype of an atom with a specified neutron number | no |
| ChemicalSaltByAnion | A grouping class for a chemical salt named by anion | no |
| ImpreciseChemicalMixture | A macroscopic polyatomic entity that consists of multiple chemical entities w... | no |
| MoleculePairwiseSimilarity | no | |
| GroupingClassForAcidsOrBases | no | |
| AcidAnionGroupingClass | A molecule grouping class that groups the different ion forms of the base of ... | no |
| MolecularCation | A polyatomic ion that is positive | no |
| ChemicalSaltGroupingClass | A grouping class for a chemical salt | no |
| Macromolecule | A large molecule, such as a polymer, lipid, or macrocycle | no |
| UnchargedAtom | An atom type that has no charge | no |
| ChemicalEntity | A discrete structure that is one or more atoms that can be described by a che... | no |
| MolecularSpecies | A molecule in which the units are identical | no |
| Radionuclide | an atom that has excess nuclear energy, making it unstable | no |
| NetUnchargedMolecule | A molecule that has no net charge | no |
| AtomGroupingByPeriodicTableGroup | Example: p-block atom | no |
| ChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| Monomer | no | |
| AtomOccurrence | An occurrence of an atom in the context of a particular molecule | no |
| NonSpeciesMolecule | A molecule in which the units are not identical | no |
| ReactionGroupingClass | A grouping class for reactions, for example, dehalogenase; breaking of covale... | no |
| Molecule | A chemical entity that consists of two or more atoms where all atoms are conn... | no |
| ChemicalRole | A characteristic of a chemical entity that is realized under particular condi... | no |
| PartiallySpecifiedAtom | An atom type that only has a subset of properties (has atomic number, charge,... | no |
| MolecularDerivativeGroupingClass | A grouping class defined as a derivative of another molecule or molecular gro... | no |
| Homopolymer | a polymer with a single type of repeating unit | no |
| ChemicalElement | generic form of an atom, with unspecified neutron or charge | no |
| Isobar | Isobars are atoms (nuclides) of different chemical elements that have the sam... | no |
| AtomGroupingClass | A grouping class that classifies atoms | no |
| MolecularAnion | A polyatomic ion that is negative | no |
| RacemicMixture | a chemical compound that has equal amounts of left- and right-handed enantiom... | no |
| MonoatomicIon | An atom type that has a charge | no |
| SupramolecularPolymer | polymeric arrays of monomeric units that are connected by reversible and high... | no |
| ProportionalPart | A part of a complex mixture that is of uniform composition | no |
| SmallMolecule | A molecule characterized by availability in small-molecule databases | no |
| Ester | An ester is a chemical compound derived from an acid (organic or inorganic) i... | no |
| AtomIonicForm | an atom type in which only charge state is specified, designated by the eleme... | no |
| OwlClass | instances of this class mixin are OWL Classes | no |
| VitaminRole | Role of providing a vitamin component | no |
| ChemicalGroup | no | |
| AtomicBond | A connection between two atoms | no |
| ChemicalGroupingByCharge | A grouping class that refines a charge-neutral entity | no |
| GeneralAcidBaseGroupingClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| Zwitterion | A molecule that has both a positive and negative charges but is net neutral | no |
| FunctionalGroup | no | |
| SubatomicParticleOccurrence | no | |
| PhysicochemicalEntityGroupingClass | no | |
| MineralNutrientRole | Role of providing a mineral nutrient, often as a trace element | no |
| GeneralizedMolecularStructureClass | A molecule grouping class that can be written using a chemical formula using ... | no |
| Protein | A macromolecule composed of one or more polypeptide chains of amino acids tha... | no |
| FullySpecifiedAtom | An atom type that has atomic number, charge, and neutron number stated (equiv... | no |
| TanimotoSimilarity | no | |
| MoleculeGroupingClassDefinedByAdditionOfAGroup | A grouping class defined in terms of a derivative of a molecule and the addit... | no |
| NeutralMolecule | A molecule that has no net charge and is not a zwitterion | no |
| MoleculeGroupingClassDefinedByComponents | A grouping class defined as an exhaustive list of components | no |
| AcidBaseConflationClass | A molecule grouping class that can groups an acid together with all its conju... | no |
| PolymerPart | no | |
| AtomGroupingByPeriodicTableBlock | Example: group 13 atom | no |
| MonomericPolymericGroupingClass | no | |
| MonomolecularPolymer | A macromolecule composed of repeating subunits | no |
| MolecularComponentGroupingClass | A grouping class that classifies molecular components | no |
| Nuclide | an atomic species characterized by the specific constitution of its nucleus | no |
| SequenceInterval | a chain of connected monomers in a linear polymer - for example, a sub-region... | no |
| NutrientRole | Role of providing nutritional value, such as vitamins or minerals | no |
| ChemicalSaltByCation | A grouping class for a chemical salt named by cation | no |
| AtomGroupingByProperty | Example: metal atom | no |
| RNASequenceInterval | no | |
| MolecularSubsequence | no | |
| ChemicalRelationship | A reified relationship | no |
| Allotrope | A molecule consisting of atoms of the same element | no |
| PolyatomicIon | A molecule that has a net charge | no |
| ChemicalSimilarity | A relationship between two or more chemical entities where there is some degr... | no |
| IngredientRole | A role that a chemical entity plays as an ingredient in a mixture, such as ca... | no |
| ChemicalGroupingClass | Instances of this class represent generic chemical concepts that can be used ... | no |
| SolventRole | Role of dissolving other components in a mixture | no |
| ReactionParticipant | Instances of this link a reaction to a chemical entity participant | no |
| Moiety | a named part of a molecule | no |
| MaterialGroupingClass | A grouping class that classifies materials | no |
| AtomCation | A monoatomic ion that is positive, e | no |
| PreciseChemicalMixture | A polyatomic entity that consists of two or more parts that are weakly bound,... | no |
| DNASequenceInterval | no | |
| Atom | A chemical entity consisting of exactly one atomic nucleus and the electron(s... | no |
| Peptide | no | |
| AtomAnion | A monoatomic ion that is negative | no |
| AtomGroupingByPeriodicTablePlacement | no | |
| Enantiomer | one of two stereoisomers of a chiral molecule that are mirror images | no |
| NucleotideSequenceInterval | no |
Mixin Usage
| mixed into | description | range | domain |
|---|---|---|---|
| subtype_of | A subtype_of relationship holds between C and P if C is a more specialized fo... | OwlClass | GroupingClass |
| classified_by | A subtype_of relationship holds between I and C if I is a specific entity of ... | OwlClass | ChemicalEntity |
Properties
-
Range: OwlClass
-
Mixin: True
Aliases
- is a
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| owl | SubClassOf |
Schema Source
- from schema: https://w3id.org/chemrof
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | chemrof:owl_subclass_of |
| native | chemrof:owl_subclass_of |
| exact | rdfs:subClassOf |
| narrow | bo:family |
LinkML Source
name: owl_subclass_of
annotations:
owl:
tag: owl
value: SubClassOf
description: 'Holds between C and P if C owl:subClassOf P. Note that in this model,
most classes are metaclasses (see ''owl class''), where these metaclasses may represent
*groupings* or specific countable elements or species. We provide two different
sub-properties of subclass of for two cases: (1) subtype_of, which connects grouping
classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a amino-acid), (2) classified_by,
which connects a specific element to a grouping class (e.g. methane is_a hydrocarbon;
iron is_a metal; serine is_a amino-acid)'
title: owl subclass of
from_schema: https://w3id.org/chemrof
aliases:
- is a
exact_mappings:
- rdfs:subClassOf
narrow_mappings:
- bo:family
rank: 1000
is_a: classification_relationship
mixin: true
domain: OwlClass
alias: owl_subclass_of
domain_of:
- OwlClass
range: OwlClass