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Class: reaction grouping class (ReactionGroupingClass)

A grouping class for reactions, for example, dehalogenase; breaking of covalent bond

URI: chemrof:ReactionGroupingClass

 classDiagram
    class ReactionGroupingClass
      GroupingClass <|-- ReactionGroupingClass

      ReactionGroupingClass : id

      ReactionGroupingClass : name

      ReactionGroupingClass : owl_subclass_of

          ReactionGroupingClass --> OwlClass : owl_subclass_of

      ReactionGroupingClass : subtype_of

          ReactionGroupingClass --> ReactionGroupingClass : subtype_of

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1..1
String		 GroupingClass
name 0..1
String		 name of chemical entity GroupingClass
subtype_of 0..*
ReactionGroupingClass		 A subtype_of relationship holds between C and P if C is a more specialized fo... GroupingClass
owl_subclass_of 0..1
OwlClass		 Holds between C and P if C owl:subClassOf P OwlClass

Usages

used by used in type used
ReactionGroupingClass subtype_of range ReactionGroupingClass

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • KEGG.REACTION

  • GO

  • MetaCyc

  • EC

  • RXNO

  • MOP

Schema Source

  • from schema: https://w3id.org/chemrof

Mappings

Mapping Type Mapped Value
self chemrof:ReactionGroupingClass
native chemrof:ReactionGroupingClass

LinkML Source

Direct

name: ReactionGroupingClass
id_prefixes:
- KEGG.REACTION
- GO
- MetaCyc
- EC
- RXNO
- MOP
description: A grouping class for reactions, for example, dehalogenase; breaking of
  covalent bond
title: reaction grouping class
from_schema: https://w3id.org/chemrof
is_a: GroupingClass
slot_usage:
  subtype_of:
    name: subtype_of
    domain_of:
    - GroupingClass
    range: ReactionGroupingClass
  classifies:
    name: classifies
    range: Reaction

Induced

name: ReactionGroupingClass
id_prefixes:
- KEGG.REACTION
- GO
- MetaCyc
- EC
- RXNO
- MOP
description: A grouping class for reactions, for example, dehalogenase; breaking of
  covalent bond
title: reaction grouping class
from_schema: https://w3id.org/chemrof
is_a: GroupingClass
slot_usage:
  subtype_of:
    name: subtype_of
    domain_of:
    - GroupingClass
    range: ReactionGroupingClass
  classifies:
    name: classifies
    range: Reaction
attributes:
  id:
    name: id
    title: id
    from_schema: https://w3id.org/chemrof
    mappings:
    - schema:identifier
    rank: 1000
    is_a: information_property
    identifier: true
    alias: id
    owner: ReactionGroupingClass
    domain_of:
    - DomainEntity
    - GroupingClass
    - ChemicalGroupingClass
    range: string
    required: true
  name:
    name: name
    description: name of chemical entity. E.g. nickel, carbon-16
    title: name
    from_schema: https://w3id.org/chemrof
    close_mappings:
    - bo:symbol
    rank: 1000
    is_a: information_property
    slot_uri: rdfs:label
    alias: name
    owner: ReactionGroupingClass
    domain_of:
    - DomainEntity
    - GroupingClass
    - Atom
    - AtomOccurrence
    range: string
  subtype_of:
    name: subtype_of
    description: A subtype_of relationship holds between C and P if C is a more specialized
      form of P. Here C and P denotes instances of OWL classes, where C and P both
      function as grouping class
    title: subtype of
    from_schema: https://w3id.org/chemrof
    rank: 1000
    is_a: chemical_to_chemical_relationship
    domain: OwlClass
    multivalued: true
    alias: subtype_of
    owner: ReactionGroupingClass
    domain_of:
    - GroupingClass
    range: ReactionGroupingClass
    required: false
  owl_subclass_of:
    name: owl_subclass_of
    description: 'Holds between C and P if C owl:subClassOf P. Note that in this model,
      most classes are metaclasses (see ''owl class''), where these metaclasses may
      represent *groupings* or specific countable elements or species. We provide
      two different sub-properties of subclass of for two cases: (1) subtype_of, which
      connects grouping classes (e.g. alkane is_a hydrocarbon; alpha-amino-acid is_a
      amino-acid), (2) classified_by, which connects a specific element to a grouping
      class (e.g. methane is_a hydrocarbon; iron is_a metal; serine is_a amino-acid)'
    title: owl subclass of
    from_schema: https://w3id.org/chemrof
    aliases:
    - is a
    exact_mappings:
    - rdfs:subClassOf
    narrow_mappings:
    - bo:family
    rank: 1000
    is_a: classification_relationship
    mixin: true
    domain: OwlClass
    alias: owl_subclass_of
    owner: ReactionGroupingClass
    domain_of:
    - OwlClass
    range: OwlClass